Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0206
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical...    29   1.9  
Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine re...    27   4.4  
AF016653-2|AAC48225.2|  914|Caenorhabditis elegans Patched relat...    27   7.7  

>AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical
           protein F25E5.1 protein.
          Length = 1062

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -3

Query: 176 HRLPNNHMILHTMYPKRIIHYFLRE 102
           H++P++ ++  T+YP++I+   LRE
Sbjct: 637 HKVPDDEILFQTVYPEKILENRLRE 661


>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical
           protein C27A7.4 protein.
          Length = 1403

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 119 ELFVWDTSCVISYDYLVIYEDFITSTNSCGTT*IAVNCLFIGFCVRTDDDEAR 277
           +L VW+   V++YD          ++ SC TT +A+    + +C+  D   AR
Sbjct: 401 QLVVWNEDTVVTYDVQTSLATIQCTSFSCNTTSVAIVNQNL-YCIEKDKIFAR 452


>AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein37 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +2

Query: 59  MIHNLSNQNFAFTFVL*ENNELF---VWDTSCVISYDYLVIYEDFITSTNSCGTT*IAVN 229
           ++  L NQ+ A   V+ +N+E +   +WD++ V+     +   D +     C    I VN
Sbjct: 157 IVWQLPNQHSAKLEVI-QNHEAYPDSIWDSNVVV-----ITLADSVVDNTICAL--IVVN 208

Query: 230 CLFIGFCV 253
           C+ IGF +
Sbjct: 209 CVSIGFAI 216


>AF016653-2|AAC48225.2|  914|Caenorhabditis elegans Patched related
           family protein 3 protein.
          Length = 914

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -2

Query: 342 KILVTIDYHRKSLIDLRDYHLFLASSSSVRTQNPINKQFTAIYVVPQLFVDVMKS 178
           K LVT  YH   L+D  +    L    SV  Q+        +Y     F+D++++
Sbjct: 678 KFLVTTAYHGSDLVDWSNRAKLLNEWRSVADQDKFKSLNVTVYEEDAKFLDLIET 732


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,552,555
Number of Sequences: 27780
Number of extensions: 180977
Number of successful extensions: 381
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)