Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0206
         (433 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42910.1 68415.m05316 ribose-phosphate pyrophosphokinase 4 / ...    27   4.1  
At5g23890.1 68418.m02806 expressed protein weak similarity to SP...    27   7.2  
At1g30860.1 68414.m03774 expressed protein                             27   7.2  

>At2g42910.1 68415.m05316 ribose-phosphate pyrophosphokinase 4 /
           phosphoribosyl diphosphate synthetase 4 (PRS4) identical
           to phosphoribosyl diphosphate synthase (prs4)
           [Arabidopsis thaliana] GI:4902472
          Length = 337

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -2

Query: 300 DLRDYHL-FLASSSSVRTQNPINKQFTAIYVVPQLFV 193
           D+R  H+ FLAS SS      I +Q + IY++P+LFV
Sbjct: 74  DIRGQHVAFLASFSSPAV---IFEQISVIYLLPRLFV 107


>At5g23890.1 68418.m02806 expressed protein weak similarity to
           SP|P12957 Caldesmon (CDM) {Gallus gallus}
          Length = 946

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 336 LVTIDYHRKSLIDLRDYHLFLASSSSVRTQNPINKQFTAIYV 211
           ++  D     L   R+Y  +L S+SS  ++N  +K + A+Y+
Sbjct: 449 VIETDTQPSDLCTRREYARWLISASSALSRNTTSKVYPAMYI 490


>At1g30860.1 68414.m03774 expressed protein
          Length = 730

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 57  CCVCDKSQVKKIKY 16
           CCVCD++QV+ + Y
Sbjct: 676 CCVCDETQVEAVLY 689


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,752,526
Number of Sequences: 28952
Number of extensions: 159531
Number of successful extensions: 306
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)