Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0204
(520 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 38 0.001
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 33 0.019
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 33 0.026
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 32 0.045
SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces... 29 0.55
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 1.3
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 2.2
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 2.2
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 26 2.9
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 26 3.9
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 25 6.8
SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce... 25 6.8
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 25 9.0
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|... 25 9.0
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 9.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 9.0
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 37.5 bits (83), Expect = 0.001
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Frame = +3
Query: 246 QSRL-QEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNI----KGM 410
QS+L Q+K+ ++ LN+R++A D++ +ES N E++ ++ + I K
Sbjct: 819 QSQLNQDKNQIETLNERISAAADELSSMESINKNQANELKLAKQKCSNLQEKINFGNKLA 878
Query: 411 YEH--ELQDARKLLDDTXREKAKLEIDLKRLYEENDDL 518
EH ++ K L+ + + L +LK + END L
Sbjct: 879 KEHTEKISSLEKDLEAATKTASTLSKELKTVKSENDSL 916
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 33.5 bits (73), Expect = 0.019
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Frame = +3
Query: 261 EKDALQNLNDRLAAYIDKV----RQLESENSGLRREIQTTQEVVTREVSNIK--GMYEHE 422
EK L N+ L +DK+ + ES++S L +++ QE E+SN+K M + +
Sbjct: 914 EKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQE----EISNLKEENMSQSQ 969
Query: 423 -LQDARKLLDDTXREKAKLEIDLKRL 497
+ + LD+T + +KLE D++ L
Sbjct: 970 AITSVKSKLDETLSKSSKLEADIEHL 995
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 33.1 bits (72), Expect = 0.026
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Frame = +3
Query: 252 RLQEK-DALQNLND-----RLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMY 413
+L+EK D L +ND + + +++R LE+ ++RE + + + SN + Y
Sbjct: 224 KLEEKVDYLSKVNDVEQSQNVKVFTERIRFLENALEKVQREKDSLSTEMEEDKSNKEVDY 283
Query: 414 EHELQDARKLLDDTXREKAKLEIDLKRLYEENDDL 518
E+E++ + LD+ E L++ L E+ D++
Sbjct: 284 EYEIRQLQNRLDELSEE---LDVAQDLLTEKEDEI 315
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 32.3 bits (70), Expect = 0.045
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 258 QEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREV 392
+EK+ L++ R Y DKV LE EN ++ E+ + + ++T E+
Sbjct: 272 EEKNDLESKLYRFEEYRDKVATLELENEKIQTELNSWKSLITNEL 316
>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 114
Score = 28.7 bits (61), Expect = 0.55
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Frame = +3
Query: 276 QNLNDRLAAYIDKVRQLES---ENSGLRREIQ--TTQEVVTREV--SNIKGMYEHELQDA 434
QNL L+ Y++ +++LE+ EN+ + E++ + +++ + +K +E +
Sbjct: 9 QNLQTELSTYVESLKKLETQLQENTTVLNELEKVAPDSNIYKQIGPTLVKQSHEEAKTNV 68
Query: 435 RKLLDDTXREKAKLEIDLKRLYEE 506
+ LD +E A+LE K EE
Sbjct: 69 KTRLDFINKEIARLENQTKISQEE 92
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.5 bits (58), Expect = 1.3
Identities = 24/90 (26%), Positives = 39/90 (43%)
Frame = +3
Query: 243 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHE 422
RQ R E+ A Q L A + + + E L+RE + Q+ + R+ K +
Sbjct: 612 RQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKER 671
Query: 423 LQDARKLLDDTXREKAKLEIDLKRLYEEND 512
+ +K + REK E +RL EE +
Sbjct: 672 EKKLKKQQQEADREKMARE---QRLREEEE 698
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 294 LAAYIDKV-RQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARKL 443
++A +D V R +ESE+ ++ TRE+S I + EH+L+ A K+
Sbjct: 1445 ISASLDDVERSIESEDFQSVGDVNVKVNRNTREISFIYNVDEHKLEMAIKI 1495
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 26.6 bits (56), Expect = 2.2
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Frame = +3
Query: 243 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRR-------EIQTTQEVVTREVSNI 401
RQ + QE+D LQN + L +R+ ++ LR E Q ++ SN+
Sbjct: 502 RQLKEQEED-LQNKEEELTELRKLLREQTQDSQKLRLLVEQLELERQDLKQAGENHYSNL 560
Query: 402 KGMYEHELQDARKLLDDTXREKAKLEIDLKRLYEENDDL 518
YE +++ L ++ E + + L + D+L
Sbjct: 561 SSDYETQIKSLESSLTNSQAECVSFQEKINELNSQIDEL 599
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 255 LQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSN 398
LQ+KD L+ R + +K+ LES S + I + ++ T E N
Sbjct: 147 LQKKDELEKSIQRCSELEEKINSLESAQSIEQEVISSLKDDKTVETKN 194
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 404 FNVGNLAGDHLLCGLYFTT*SRILTLQLAYFIDIGSQPVV 285
F G+LAG C ++FT ++ ++LAY + G P +
Sbjct: 120 FLSGSLAGT---CSVFFTYPLELIRVRLAYITNTGKNPTL 156
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = -1
Query: 160 CSDDTTLAFDEDV----TVFLVFVYLVGYI 83
C+D +L E + T++L VY++GYI
Sbjct: 319 CTDSVSLLITEPIVVCFTLYLTVVYIIGYI 348
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 238 GLSGLLGRPAELEGRLPTGVLDCSGLCSD 152
G+ + R +L LPTG ++CSG D
Sbjct: 715 GIRDRMYRSGDLGRYLPTGNVECSGRADD 743
>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 246 QSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQ-EVVTREVSNIKGMYEHE 422
QS +Q K ++ + R + K+R+ ES GLR +I+ EV + I YE
Sbjct: 106 QSHVQVKKSVVKIG-RPGYKVSKIREAESGKFGLRFQIKYPDIEVNAKPRYRIMSAYEQR 164
Query: 423 LQ 428
++
Sbjct: 165 VE 166
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 240 TRQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVT 383
T Q + EK L +AY +K R LE + +TT E +T
Sbjct: 127 TNQIKSYEKK-YYTLKKTKSAYYNKCRNLEDYEEESKESNETTSEAIT 173
>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
Pef1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 288
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 101 ILSGIHFCHNNKL*H 57
+L GI FCH N++ H
Sbjct: 110 LLKGISFCHENRVLH 124
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 252 RLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQ 362
RL++KD + A Y+ + + S +SG+RR ++
Sbjct: 460 RLEQKDTVVRYAQSAALYLIFLLRRPSADSGIRRHLE 496
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 252 RLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQ 362
RL++KD + A Y+ + + S +SG+RR ++
Sbjct: 460 RLEQKDTVVRYAQSAALYLIFLLRRPSADSGIRRHLE 496
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,504
Number of Sequences: 5004
Number of extensions: 39639
Number of successful extensions: 143
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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