Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0204
         (520 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    30   0.054
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    28   0.22 
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    27   0.38 
U50479-1|AAA93478.1|  151|Anopheles gambiae protein ( Anopheles ...    25   1.5  
AJ973475-1|CAJ01522.1|  127|Anopheles gambiae hypothetical prote...    25   1.5  
AJ697728-1|CAG26921.1|  127|Anopheles gambiae putative sensory a...    25   1.5  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   3.5  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 29.9 bits (64), Expect = 0.054
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
 Frame = +3

Query: 243  RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQE---VVTREVSNIKGMY 413
            RQ   ++K+ ++ +    AA+   V Q+E E +  RRE+Q   +    + + ++NI+   
Sbjct: 870  RQEIEKDKEKIELMKQEKAAHKTLVDQMEEEMAKARREVQALAKELAAIHQSIANIESRI 929

Query: 414  EHELQDARKLLDDTXREKAKLE-IDLKRLYEENDDL 518
            E     + K    T   +AK+E I++  L    DD+
Sbjct: 930  E-----SMKSKRQTILMQAKMESIEIPLLQGSMDDI 960


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 27.9 bits (59), Expect = 0.22
 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
 Frame = +3

Query: 264 KDALQNLNDRLAAYID---KVRQLESENSGLRREIQTT--QEVVTREVSNIKGMYEHELQ 428
           +D  +N+N   AAY++   K+ ++E +   L RE+Q+T  +E     ++  +   + E++
Sbjct: 431 RDKQKNMNSSDAAYLEDKRKLTKVEGQIGQLERELQSTGYEEGSMETLAGRRQALQQEVR 490

Query: 429 DARKLLDDTXREKAKLE 479
             R  LD     + +L+
Sbjct: 491 GLRSELDRRNAHRWELQ 507


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 27.1 bits (57), Expect = 0.38
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 273 LQNLNDRLAAYIDKVRQLESENSGLRRE 356
           LQN+  +L   ++++R    EN+ LRRE
Sbjct: 110 LQNIGAQLTTALEELRLCREENAALRRE 137


>U50479-1|AAA93478.1|  151|Anopheles gambiae protein ( Anopheles
           gambiae putativeribosomal protein S13 mRNA, complete
           cds. ).
          Length = 151

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 241 PGKAVCKRKMHYKISTTGWLPIS 309
           PGK + K  + Y+ S   WL +S
Sbjct: 7   PGKGISKSALPYRRSVPSWLKLS 29


>AJ973475-1|CAJ01522.1|  127|Anopheles gambiae hypothetical protein
           protein.
          Length = 127

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 246 QSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRRE 356
           ++R ++ DALQ   D    Y++K R+ E++  G++ E
Sbjct: 92  ENRKEQWDALQKKYDPENLYVEKYRE-EAKKEGIKLE 127


>AJ697728-1|CAG26921.1|  127|Anopheles gambiae putative sensory
           appendage protein SAP-2 protein.
          Length = 127

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 246 QSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRRE 356
           ++R ++ DALQ   D    Y++K R+ E++  G++ E
Sbjct: 92  ENRKEQWDALQKKYDPENLYVEKYRE-EAKKEGIKLE 127


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +1

Query: 328  RVRIRDYVV--KYKPHRRWSPARF--PTLKECTSMNSKMP 435
            R R+ D ++  K++PH  W P  +  P   E T +++K+P
Sbjct: 1732 RKRLGDCMIAAKFEPHDNWLPPCYYVPKELEQTLIDAKIP 1771


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 512,232
Number of Sequences: 2352
Number of extensions: 9916
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47360208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)