Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0204
         (520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.47 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   3.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   5.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 513 RRSLRTISSNQFQV*LSLXMYHLTVSWHL 427
           R   +T  SNQ +V + L  Y+++V W +
Sbjct: 176 RHLAQTEDSNQIEVGIDLTDYYISVEWDI 204


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 101 ILSGIHFCHNNKL*H 57
           IL  +H CH+N + H
Sbjct: 18  ILESVHHCHHNGVVH 32


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 26  FAFRVENTLLCVKVCYCDKNVSH 94
           F F   + L+  +VCY   +V+H
Sbjct: 150 FFFAATSLLVVAEVCYFTAHVTH 172


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 444 TVSWHLGVHARTFL*CWKPR 385
           T++ H+G+  RT    WK +
Sbjct: 320 TIATHMGLDTRTSTSLWKDK 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,479
Number of Sequences: 438
Number of extensions: 2653
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)