Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0204
(520 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 34 0.050
At3g53350.1 68416.m05886 myosin heavy chain-related low similari... 33 0.087
At3g53350.3 68416.m05888 myosin heavy chain-related low similari... 33 0.12
At3g53350.2 68416.m05887 myosin heavy chain-related low similari... 33 0.12
At5g52280.1 68418.m06488 protein transport protein-related low s... 32 0.27
At5g08410.1 68418.m00990 ferredoxin-thioredoxin reductase, putat... 31 0.35
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 30 0.81
At2g39300.1 68415.m04825 expressed protein ; expression supporte... 30 0.81
At1g64320.1 68414.m07289 myosin heavy chain-related similar to m... 30 0.81
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 30 1.1
At5g40450.1 68418.m04905 expressed protein 29 1.4
At3g46840.1 68416.m05084 subtilase family protein contains simil... 29 1.4
At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger) fa... 29 1.4
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 29 1.9
At3g46850.1 68416.m05085 subtilase family protein contains simil... 29 2.5
At2g31900.1 68415.m03897 myosin family protein contains Pfam pro... 29 2.5
At1g20530.1 68414.m02558 hypothetical protein 29 2.5
At2g30500.1 68415.m03715 kinase interacting family protein simil... 28 3.3
At5g44180.1 68418.m05406 homeobox transcription factor, putative... 28 4.3
At5g32440.1 68418.m03825 expressed protein 28 4.3
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot... 28 4.3
At2g34930.1 68415.m04288 disease resistance family protein conta... 28 4.3
At1g67230.1 68414.m07652 expressed protein 28 4.3
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa... 28 4.3
At1g12460.1 68414.m01440 leucine-rich repeat transmembrane prote... 28 4.3
At3g29380.1 68416.m03691 transcription factor IIB (TFIIB) family... 27 5.7
At1g62630.1 68414.m07066 disease resistance protein (CC-NBS-LRR ... 27 5.7
At1g30840.1 68414.m03771 purine permease-related low similarity ... 27 5.7
At5g51370.1 68418.m06369 F-box family protein similar to unknown... 27 7.6
At5g45310.1 68418.m05562 expressed protein 27 7.6
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 27 7.6
At3g13270.1 68416.m01670 hypothetical protein contains similarit... 27 7.6
At2g28620.1 68415.m03479 kinesin motor protein-related 27 7.6
At2g25730.1 68415.m03084 expressed protein 27 7.6
>At4g14760.1 68417.m02271 M protein repeat-containing protein contains
Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 34.3 bits (75), Expect = 0.050
Identities = 19/69 (27%), Positives = 37/69 (53%)
Frame = +3
Query: 312 KVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARKLLDDTXREKAKLEIDLK 491
K+ E E+ GL + ++ QE + E + + G+ EH++ + ++L+ E + E LK
Sbjct: 1081 KLEGKEKESQGLNKMLENLQEGL-EEDNFLTGLLEHQVSNVDEILEHREMEILEAEHMLK 1139
Query: 492 RLYEENDDL 518
EN++L
Sbjct: 1140 ATNNENEEL 1148
>At3g53350.1 68416.m05886 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 396
Score = 33.5 bits (73), Expect = 0.087
Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +3
Query: 282 LNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDAR-KLLDDTX 458
LN+ ++ +LES S L+ E++ +E + R + +K + E +DA+ +L+D
Sbjct: 62 LNEIQKKRTGRIPELESTISQLQEELKKAKEELNRSEA-LKREAQEEAEDAKHQLMDINA 120
Query: 459 REKAKLEIDLKRLYEEND 512
E +++E +L++L +E D
Sbjct: 121 SEDSRIE-ELRKLSQERD 137
>At3g53350.3 68416.m05888 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 394
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/68 (29%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +3
Query: 312 KVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDAR-KLLDDTXREKAKLEIDL 488
++ +LES S L+ E++ +E + R + +K + E +DA+ +L+D E +++E +L
Sbjct: 70 RIPELESTISQLQEELKKAKEELNRSEA-LKREAQEEAEDAKHQLMDINASEDSRIE-EL 127
Query: 489 KRLYEEND 512
++L +E D
Sbjct: 128 RKLSQERD 135
>At3g53350.2 68416.m05887 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 394
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/68 (29%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +3
Query: 312 KVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDAR-KLLDDTXREKAKLEIDL 488
++ +LES S L+ E++ +E + R + +K + E +DA+ +L+D E +++E +L
Sbjct: 70 RIPELESTISQLQEELKKAKEELNRSEA-LKREAQEEAEDAKHQLMDINASEDSRIE-EL 127
Query: 489 KRLYEEND 512
++L +E D
Sbjct: 128 RKLSQERD 135
>At5g52280.1 68418.m06488 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 853
Score = 31.9 bits (69), Expect = 0.27
Identities = 21/90 (23%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Frame = +3
Query: 258 QEKDALQNLNDRLAAYIDKVRQLESENSGLRRE-IQTTQEV--VTREVSNIKGMYEHELQ 428
+ D ++ L L A + E E LR++ I+ ++ + +++EVS +KG + ++
Sbjct: 261 ESSDPIERLKMELEALRRQSELSELEKQSLRKQAIKESKRIQELSKEVSCLKGERDGAME 320
Query: 429 DARKLLDDTXREKAKLEIDLKRLYEENDDL 518
+ KL R++A E L+ + E++ ++
Sbjct: 321 ECEKLRLQNSRDEADAESRLRCISEDSSNM 350
>At5g08410.1 68418.m00990 ferredoxin-thioredoxin reductase, putative
similar to ferredoxin-thioredoxin reductase, variable
chain (FTR-V, Ferredoxin- thioredoxin reductase subunit
A, FTR-A) [Zea mays] SWISS-PROT:P80680
Length = 184
Score = 31.5 bits (68), Expect = 0.35
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 454 VSSNSFLASWSSCSYIPLMLETSRVTTSCVVCISRRNPEFSL 329
+S + S SS ++P+ L TS + C ISR+NP+ ++
Sbjct: 29 LSGRKSINSSSSSIFVPISLSTSYGRSKCAFSISRKNPKSTI 70
>At4g02660.1 68417.m00361 WD-40 repeat family protein /
beige-related contains Pfam PF00400: WD domain, G-beta
repeat; similar to BEIGE (GI:3928547) [Rattus
norvegicus]; lysosomal trafficking regulator - Bos
taurus, EMBL: AF114785
Length = 3471
Score = 30.3 bits (65), Expect = 0.81
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 441 LLDDTXREKAKLEIDLKRLYEE 506
LL T R+K KLE+D KR +EE
Sbjct: 57 LLSPTSRDKLKLELDFKRYWEE 78
>At2g39300.1 68415.m04825 expressed protein ; expression supported
by MPSS
Length = 768
Score = 30.3 bits (65), Expect = 0.81
Identities = 18/79 (22%), Positives = 38/79 (48%)
Frame = +3
Query: 255 LQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDA 434
++EK L + + +++ + +RQ+E E GL E+ + E ++ + D
Sbjct: 275 MEEKKFLSDCDFDISSLVGDIRQMEEERVGLAFEVLSLLRSQMDERASTREDIRRVKNDW 334
Query: 435 RKLLDDTXREKAKLEIDLK 491
LL +EK +L++ L+
Sbjct: 335 DLLLKRLEKEKTELQVQLE 353
>At1g64320.1 68414.m07289 myosin heavy chain-related similar to
myosin heavy chain (GI:4249703) [Rana catesbeiana];
similar to smooth muscle myosin heavy chain SM2
(GI:2352945) [Homo sapiens]
Length = 476
Score = 30.3 bits (65), Expect = 0.81
Identities = 19/77 (24%), Positives = 35/77 (45%)
Frame = +3
Query: 246 QSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHEL 425
++++Q K + + +++ QL+ EN L R I + +K HE+
Sbjct: 128 ETKMQLKSLKEETEEERNRLSEEIDQLKGENQMLHRRISELDSLHME----MKTKSAHEM 183
Query: 426 QDARKLLDDTXREKAKL 476
+DA K LD ++ KL
Sbjct: 184 EDASKKLDTEVSDQKKL 200
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein
helicase, putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 267 DALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVT 383
+ + NL++RL Y VR+L + S REI+ TQ +VT
Sbjct: 574 EVVGNLSNRLKDYGVIVRELSGDQSLTGREIEETQIIVT 612
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = +3
Query: 297 AAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARKLLDDTXREKAKL 476
A I+ +++ E E + +IQ + E V S ++ E QD + ++ EKAK
Sbjct: 1036 AENIENIKENEEEQAA--EKIQKSLETVQTVESPSSLLFSSEEQDHVTVAEEIVDEKAKE 1093
Query: 477 EIDLKRLYEEND 512
E+ + ++ E+D
Sbjct: 1094 EVPMLQIKNEDD 1105
>At3g46840.1 68416.m05084 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo];
Length = 738
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = -1
Query: 511 SFSSYNLFKSISSLAFSRXVSSNSFLASWSSCSYIPLMLETSRVTTSCVVCISRRNPE 338
S +S++L L + + SS+ AS CS P L++ RV V+C S +NP+
Sbjct: 352 SVNSFDLNGKKYPLVYGKSASSSCGAASAGFCS--PGCLDSKRVKGKIVLCDSPQNPD 407
>At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 878
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +3
Query: 291 RLAAYIDKVRQ-LESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARKLLDDTXREK 467
R A++ ++ L+ +N LR + E V++++ E E+ D R+ +DD R+
Sbjct: 559 RAWAHVQSLKSSLDEQNLELRVKAANEAEAVSQQML---AAAEAEIADLRQKMDDCKRDV 615
Query: 468 AKLEIDLKRLYEEN 509
AK LK +EE+
Sbjct: 616 AKHSDILKSKHEEH 629
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/65 (24%), Positives = 37/65 (56%)
Frame = +3
Query: 312 KVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARKLLDDTXREKAKLEIDLK 491
++ L+S + ++ +++ TQE ++E+S+++ + L D + L DT K+K DL+
Sbjct: 921 EIEALQSVLTDIKLQLRDTQETKSKEISDLQSV----LTDIKLQLRDTQETKSKEISDLQ 976
Query: 492 RLYEE 506
++
Sbjct: 977 SALQD 981
>At3g46850.1 68416.m05085 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo];
Length = 736
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -1
Query: 511 SFSSYNLFKSISSLAFSRXVSSNSFLASWSSCSYIPLMLETSRVTTSCVVCISRRNP 341
S +S++L L + + SS +S CS P L++ RV V+C ++RNP
Sbjct: 352 SVNSFDLNGKKYPLVYGKSASSRCDASSAGFCS--PGCLDSKRVKGKIVLCDTQRNP 406
>At2g31900.1 68415.m03897 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF01843 DIL
domain, PF00612 IQ calmodulin-binding motif, PF02736
myosin N-terminal SH3-like domain
Length = 1556
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 243 RQSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVV 380
RQ L +++ + + L + DKV LESEN LRR+ ++ ++ +
Sbjct: 1046 RQQALAASTSVEEIGE-LNSLKDKVAILESENETLRRQTESAEKTM 1090
>At1g20530.1 68414.m02558 hypothetical protein
Length = 614
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/79 (20%), Positives = 36/79 (45%)
Frame = +3
Query: 246 QSRLQEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHEL 425
+ + E + +N+N + K+ LE E ++R+++T V N+K E
Sbjct: 533 EKQRMELEEQRNVNGSVKDIERKLMMLEKEEQKMQRKMKTVPSVALMGSLNLKSNMEQIF 592
Query: 426 QDARKLLDDTXREKAKLEI 482
+ KL ++ + +L++
Sbjct: 593 KSMEKLATNSKQTYEELDL 611
>At2g30500.1 68415.m03715 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 517
Score = 28.3 bits (60), Expect = 3.3
Identities = 21/82 (25%), Positives = 39/82 (47%)
Frame = +3
Query: 261 EKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARK 440
EK + L +RLA ++ ++E L+ + ++ + E + IKG L++ R
Sbjct: 324 EKKEVLKLQERLAMVKTSLQDRDNEIRALKTAVSDAEQKIFPEKAQIKGEMSKMLEE-RS 382
Query: 441 LLDDTXREKAKLEIDLKRLYEE 506
L + RE LE ++ + EE
Sbjct: 383 QLGEQLRE---LESHIRLIKEE 401
>At5g44180.1 68418.m05406 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7/homeotic
protein Hox7 (GI:19486) {Lycopersicon peruvianum};
similar to GP|4165087| Williams-Beuren syndrome deletion
transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
domain and Pfam PF00046: Homeobox domain
Length = 1694
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +3
Query: 258 QEKDALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDAR 437
++ DALQ R R++E+ +RRE++ + + I+ E + ++ R
Sbjct: 317 EDDDALQLERHRKNEEARIAREVEAHEKRIRRELEKQDMLRRKREEQIRKEMERQDRERR 376
Query: 438 KLLDDTXREKAKLE 479
K + REK + E
Sbjct: 377 KEEERLLREKQREE 390
>At5g32440.1 68418.m03825 expressed protein
Length = 264
Score = 27.9 bits (59), Expect = 4.3
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +3
Query: 267 DALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARKLL 446
DA+QNL ++ + ENS L+R + TQ+ RE + ELQ R+L+
Sbjct: 171 DAMQNLQQENMMLKQQLEAIVQENSLLKRAV-VTQQKRQRESED----QSQELQHLRQLV 225
Query: 447 DDTXREKAKLEID 485
+ LE++
Sbjct: 226 TQYQEQLRTLEVN 238
>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 protein,
Xenopus laevis, PIR:T30335
Length = 1229
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +3
Query: 339 SGLRREIQTTQEVVTREVSNIKGMYEHELQDARKLLDDTXREKAKLEIDLKRLYEE 506
+G ++ +QE T+ S +K + +L RK +DD ++ KLE ++K + E
Sbjct: 1053 TGKATDLLKSQEEKTKLQSEMK-LSREKLASVRKEVDDMTKKSLKLEKEIKTMETE 1107
>At2g34930.1 68415.m04288 disease resistance family protein contains
leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.1 [Lycopersicon
pimpinellifolium] gi|1184075|gb|AAC15779
Length = 905
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 244 LVGLSGLLGRPAELEGRLPTGVLDCSGLCSDD 149
L LS LL LEG++P + +CSGL + D
Sbjct: 662 LPSLSVLLLNQNSLEGKIPESLRNCSGLTNID 693
>At1g67230.1 68414.m07652 expressed protein
Length = 1132
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +3
Query: 318 RQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARKLLDDTXREKAKLEIDLKR 494
++ ESE S L +I+ + + ++ I E ELQ +KL ++ REK I+ R
Sbjct: 598 KKAESERSQLLHDIEMRKRKLESDMQTILEEKERELQAKKKLFEE-EREKELSNINYLR 655
>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 429 DARKLLDDTXREKAKLEIDLKRLYEENDDL 518
D + LDD REK KLE +L L +E ++L
Sbjct: 277 DIKLELDDERREKKKLEEELMELNKELEEL 306
>At1g12460.1 68414.m01440 leucine-rich repeat transmembrane protein
kinase, putative
Length = 882
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 247 CLVGLSGLLGRPAELEGRLPTGVLDCSGL 161
C L L EL GR+PTGV+ C L
Sbjct: 282 CSESLEFLDASSNELTGRIPTGVMGCKSL 310
>At3g29380.1 68416.m03691 transcription factor IIB (TFIIB) family
protein contains Pfam profile: PF00382 transcription
factor TFIIB repeat
Length = 336
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 267 DALQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSN-IKGMYEHELQ 428
D +N LAA I + + N REI EVV + N +K MY + L+
Sbjct: 252 DIRRNPKSVLAAIIFMISHISQTNRKPIREIGIVAEVVENTIKNSVKDMYPYALK 306
>At1g62630.1 68414.m07066 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 893
Score = 27.5 bits (58), Expect = 5.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 396 NIKGMYEHELQDARKLLDDTXRE-KAKLEIDLKRLYEEND 512
++KG Y H L+ L+ T E KAK + L+RL E D
Sbjct: 21 DMKGSYTHNLEKNLVALETTMEELKAKRDDLLRRLKREED 60
>At1g30840.1 68414.m03771 purine permease-related low similarity to
purine permease [Arabidopsis thaliana] GI:7620007;
contains Pfam profiles PF03151: Domain of unknown
function, DUF250, PF00892: Integral membrane protein
Length = 382
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -1
Query: 517 RSSFSSYNLFKSISSLAFSRXVSSNSFLASWSSCSYIPLMLETSRVTTSCV 365
R F+ + L I S+ + N+FL SW + SY+P+ + ++T V
Sbjct: 87 RRPFTRFTLRHLIFSVLIGLVLGFNNFLFSWGT-SYLPVSTSSLLLSTQLV 136
>At5g51370.1 68418.m06369 F-box family protein similar to unknown
protein (emb|CAB82288.1) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 355
Score = 27.1 bits (57), Expect = 7.6
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = -1
Query: 286 LRFCNA--SFSCKRLCLVGLSGLLGRPAELEGRLPTGVLDCSGLCSDDTTLA 137
LR C A S KR CL G+ +G + DC GL D +LA
Sbjct: 300 LRSCPAMESLQLKRCCLNDKEGIKALFKVCDGATEVNIQDCWGLSDDCFSLA 351
>At5g45310.1 68418.m05562 expressed protein
Length = 352
Score = 27.1 bits (57), Expect = 7.6
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Frame = +3
Query: 291 RLAAYIDKVRQLESENSGLRREIQTTQ------EVVTREVSNIKGMYEHELQDARKLLDD 452
R A I + R LE LR E+++ + E RE + E +L + D+
Sbjct: 78 RFFASIPRERLLEQSIYDLRYELESLEWNRKEIEKNLREAIKEYRIMEQDLDELEDEHDE 137
Query: 453 TXREKAKLEIDLKRLYEEN 509
+ KLE +L+ L EEN
Sbjct: 138 AISKIEKLEAELQELKEEN 156
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 27.1 bits (57), Expect = 7.6
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +3
Query: 312 KVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARKLLDDTXREKAKLEIDLK 491
K+R+ + + E +EVV E+ E L + +KL+ +E AKL
Sbjct: 238 KMREALRDEVMVMEERLEVKEVVCSELQKKSKRLEDLLINEKKLVSQRRKELAKLHKSYS 297
Query: 492 RLYEENDDL 518
R+ E D+L
Sbjct: 298 RVRECTDNL 306
>At3g13270.1 68416.m01670 hypothetical protein contains similarity
to replication protein A1
Length = 570
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1
Query: 433 ASWSSCSYIPLMLETSRVTTSCVVCISRR 347
AS S IPLMLE S+ TT V +S+R
Sbjct: 441 ASIVSGDQIPLMLEYSQETTDTVTPVSKR 469
>At2g28620.1 68415.m03479 kinesin motor protein-related
Length = 1076
Score = 27.1 bits (57), Expect = 7.6
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +3
Query: 300 AYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYEHELQDARKLLDDTXREKAKLE 479
A DK+ Q+E E ++I QE+ E G+ E +L K L +T E+A L+
Sbjct: 447 AMADKIEQMEVEGEAKDKQIIDLQELYNSEQLVTAGLRE-KLDKTEKKLYET--EQALLD 503
Query: 480 IDLK 491
++ K
Sbjct: 504 LEEK 507
>At2g25730.1 68415.m03084 expressed protein
Length = 2464
Score = 27.1 bits (57), Expect = 7.6
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +3
Query: 273 LQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGMYE-HELQDARKLLD 449
+Q L DR+ I + + E ENSGL ++ Q V+ V +K + + + + K+ +
Sbjct: 103 VQVLIDRVTERIKEDEESEDENSGLGNCLRVLQGVLELGVERLKFVVDTSSSEGSNKIEE 162
Query: 450 DTXREKAKLEIDLKRLYE 503
D + +D +++
Sbjct: 163 DAVVSLRSIVLDYSDVFD 180
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,607,585
Number of Sequences: 28952
Number of extensions: 212024
Number of successful extensions: 665
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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