Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0202
         (403 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)             134   3e-32
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.022
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.61 
SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_35869| Best HMM Match : Piwi (HMM E-Value=4.6e-12)                  27   4.3  
SB_17254| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_9028| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.7  
SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)           27   5.7  
SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)           27   5.7  
SB_45205| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_45201| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_31221| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)               26   10.0 
SB_16139| Best HMM Match : rve (HMM E-Value=3.6e-21)                   26   10.0 
SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9)               26   10.0 

>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score =  134 bits (324), Expect = 3e-32
 Identities = 61/92 (66%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
 Frame = +3

Query: 66   VFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRK 245
            V F EKF D SWE  WV S   G + GKFK TAGKF+ D E DKG++TSEDA+FY +S K
Sbjct: 756  VHFLEKFEDKSWEDRWVSSTSKGAQQGKFKWTAGKFYGDAEADKGIQTSEDAKFYGISAK 815

Query: 246  F-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLK 338
            F KPF+NEGK LV+QF+VKHEQ+IDCGGGY K
Sbjct: 816  FEKPFTNEGKTLVIQFSVKHEQNIDCGGGYAK 847


>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 35.1 bits (77), Expect = 0.022
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = -1

Query: 325 PPQSMSCSCLTVNXTTKGLPSLLNG---LNLRERA*NLASSEVFKPLSSSGSLKNFPAVN 155
           P +  SC CL V   T GLP L++G   L    R   L+   +  P   S SL +   V 
Sbjct: 429 PSEQNSCQCLFVGWQTVGLPQLIHGTVALISFRRKRTLSGGSL--PRGRSRSLSS-DRVG 485

Query: 154 LNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNA 41
              P++  G +    +    S+G+  S+ +SQ   D A
Sbjct: 486 TRLPSARKGSASKIGIPRTSSTGSLGSRRSSQSSTDGA 523


>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 283  TTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNF 167
            TT+GLPS ++ +NL E   NL S    KP   S  + ++
Sbjct: 960  TTQGLPSKISSVNLTEALSNLISISWSKPSDGSSLITDY 998


>SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 128 VLTVHPIAFPRIIRKLLLKEYI 63
           +LT H +  P++IRK+ LK+Y+
Sbjct: 73  LLTAHLVVAPKLIRKMPLKDYV 94


>SB_35869| Best HMM Match : Piwi (HMM E-Value=4.6e-12)
          Length = 243

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 352 LQSKTLRYPPPQSMSCSCLTVNXTTKGLPSLL 257
           +Q K +  P PQ++S  CL +N    G+ ++L
Sbjct: 9   IQGKNVTKPSPQTLSNLCLKINAKLGGVNNIL 40


>SB_17254| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 352 LQSKTLRYPPPQSMSCSCLTVNXTTKGLPSLL 257
           +Q K +  P PQ++S  CL +N    G+ ++L
Sbjct: 9   IQGKNVTKPSPQTLSNLCLKINAKLGGVNNIL 40


>SB_9028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
 Frame = -2

Query: 135 FLGAHCTPNCFPT----NHQETS 79
           F+   C PNC PT    NHQ TS
Sbjct: 20  FINHSCEPNCIPTRVFVNHQPTS 42


>SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 207 TSEDARFYALSRKFK--PFSNEGKPLVVQFTVKHEQDIDCG 323
           T +D R Y   R F+  PF++     + ++  KH+++I+CG
Sbjct: 870 TPQDNRHYVYFRDFQRDPFASLDMSELYKWINKHKKNIECG 910


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 166  PAVNLNFPNSFPGCSLYTQLLS 101
            P+V LNF N+FPG  L  + +S
Sbjct: 6188 PSVELNFRNTFPGDDLLKRYIS 6209


>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
          Length = 1815

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 180  DPEDDKGLKTSEDARFYALSRKFKPFSNEGKPLVVQFTV 296
            D  D    KTSE     AL  K K    E + +VVQFT+
Sbjct: 912  DSADILSRKTSEAVLESALESKTKELLVESRQMVVQFTI 950


>SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)
          Length = 1057

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -1

Query: 202  KPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNAS 38
            KPL   G L     + +N P+S PG +  +  LS     + SS++  +F  D AS
Sbjct: 980  KPLEGPGLLNTLAVLGMNSPSSRPGANDTSADLS-----SLSSQDEQEFQRDLAS 1029


>SB_45205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
 Frame = +3

Query: 201 LKTSEDARFYALSRKFKPFSNEGK---PLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDM 371
           L+T    + Y      + FS  GK    LV+    K  +  DCG  Y    D K   +  
Sbjct: 181 LRTHTGQKPYKCDECGECFSESGKLKRHLVIHTGEKPHKCDDCGKRYTLSGDLKTHLRIH 240

Query: 372 HGETPYE 392
            GE PYE
Sbjct: 241 TGEKPYE 247


>SB_45201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
 Frame = +3

Query: 201 LKTSEDARFYALSRKFKPFSNEGK---PLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDM 371
           L+T    + Y      + FS  GK    LV+    K  +  DCG  Y    D K   +  
Sbjct: 181 LRTHTGQKPYKCDECGECFSESGKLKRHLVIHTGEKPHKCDDCGKRYTLSGDLKTHLRIH 240

Query: 372 HGETPYE 392
            GE PYE
Sbjct: 241 TGEKPYE 247


>SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 268  PSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPAVN 155
            P+  NG+N+RE    L  +++ + L   G +  F A N
Sbjct: 909  PNNPNGMNIREECAKLVLADIVEWLKDKGKVAIFDATN 946


>SB_31221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 361 CSSLQSKTLRYPPPQSMSCSCLTVNXTTKGLPSLLNGLNLRER 233
           C+S   K   Y P    +CS +     T  L  LLN L+L+++
Sbjct: 190 CTSEPFKEFFYLPDLKQACSDIRGGKFTDALSLLLNALHLQQK 232


>SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)
          Length = 1803

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 63  DVFFEEKFPDDSWESNWVYSEHP 131
           DV+   K PD +W ++W   ++P
Sbjct: 871 DVWIYHKVPDPNWYASWADKDNP 893


>SB_16139| Best HMM Match : rve (HMM E-Value=3.6e-21)
          Length = 889

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 63  DVFFEEKFPDDSWESNWVYSEHP 131
           DV+   K PD +W ++W   ++P
Sbjct: 672 DVWIYHKVPDPNWYASWADKDNP 694


>SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9)
          Length = 907

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 139 SFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTT 14
           S P C L T    H + G +S ++  Q      +K  TTST+
Sbjct: 235 SHPWCVLDTTRHPHHTRGTYSIQHDIQITPVEDTKYNTTSTS 276


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,000,635
Number of Sequences: 59808
Number of extensions: 268152
Number of successful extensions: 703
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)