Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0198
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 33 0.042
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 31 0.17
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 29 0.52
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 29 0.69
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 29 0.91
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 28 1.2
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 28 1.6
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 28 1.6
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 28 1.6
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 27 2.8
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 27 2.8
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb... 27 3.7
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 4.9
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ... 26 6.4
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 8.5
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 25 8.5
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 25 8.5
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 33.1 bits (72), Expect = 0.042
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 350 SQYPTAQSQGTESPGSPNIFEEPEQSF--AAAENDNQIDLPSTSRSHDHDPS 499
+Q P QSQ + +P + I +EP SF + E DN D+P SH +PS
Sbjct: 83 NQSPLNQSQSSANPVTFEIADEPSPSFNHSFFEKDNARDIPQ-QPSHSQNPS 133
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 31.1 bits (67), Expect = 0.17
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 2/123 (1%)
Frame = +2
Query: 365 AQSQGTESPGSPNIFEEPEQSFAAAENDNQIDLPSTSRSHDHDPSEGPLDVPSDEPIQ-- 538
+ S+G++S S + E S + + D S S S D D S D S+ +
Sbjct: 157 SSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGS 216
Query: 539 IDLAGPLRYDNDDSNDTVLNIIINGPGHLPAQSEDSNLTSPLTSFSDESTRQSINEDSNS 718
+ +++ S++ + + + SEDS+ +S + ES+ + + SNS
Sbjct: 217 DSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNS 276
Query: 719 CAS 727
S
Sbjct: 277 SDS 279
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 29.5 bits (63), Expect = 0.52
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 395 SPNIFEEPEQSFAAAENDNQIDLPSTSRSHDHDPSEGPLDVPSDEPIQIDLAG 553
SP + P E D+ + P + +HD + +G PSD + DL G
Sbjct: 230 SPQPYVRPTSDERPIETDSSVSAPKVA-NHDEELKQGKSTSPSDTVLHPDLNG 281
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 29.1 bits (62), Expect = 0.69
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 485 DHDPSEGPLDVPSDEPIQIDLAGPLRYDNDDSNDT 589
+ D + P+D PSDE I DL P D+D++ +T
Sbjct: 285 NEDEKKPPVDTPSDEAINSDLDDP---DSDEAPET 316
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 28.7 bits (61), Expect = 0.91
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 593 LNIIINGPGHLPAQSEDSNLTSPLTSFSDESTRQSINEDSNSCAS 727
L + GHLP++S S+ S SF ES +S+ SN S
Sbjct: 294 LGPVYENSGHLPSKSHFSSTDSNTDSFGLESDERSLPSVSNDLKS 338
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 28.3 bits (60), Expect = 1.2
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Frame = +3
Query: 120 ITKLICLLNVTKSNHNEIKVKTNGHQINVNNTFVKF-------YKQKIVSAQQKTFFHLY 278
+ K N+ K ++I +KT+ + +NN F +F Y +S + K + L
Sbjct: 22 VNKQNLFTNIVKPQKDKINIKTDKIKFFLNNLFTEFSKFHDSCYPDGRISTRSKLRWPLL 81
Query: 279 I*QILVIVAAID 314
I ++IV AID
Sbjct: 82 IIWCILIVFAID 93
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Frame = +3
Query: 120 ITKLICLLNVTKSNHNEIKVKTNGHQINVNNTFVKF-------YKQKIVSAQQKTFFHLY 278
+ K N+ K ++I +KT+ + +NN F +F Y +S + K + L
Sbjct: 22 VNKQNLFTNIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHDSCYPDGRISTRSKLRWPLL 81
Query: 279 I*QILVIVAAID 314
I ++IV AID
Sbjct: 82 IIWCILIVFAID 93
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +2
Query: 536 QIDLAGPLRYDNDDSNDTVLNIIINGPGHLPAQSEDSNLTSPLTSFSDESTRQSINEDSN 715
Q D L+Y+N S + VL ING + + + +T+P+ S + + +S+++
Sbjct: 41 QEDAVHDLKYENFVSKNHVLQSDINGKKRDSNRDKAAVVTAPIASTHESNYEESVSKFKE 100
Query: 716 S 718
S
Sbjct: 101 S 101
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Frame = +3
Query: 120 ITKLICLLNVTKSNHNEIKVKTNGHQINVNNTFVKF-------YKQKIVSAQQKTFFHLY 278
+ K N+ K ++I +KT+ + +NN F +F Y +S + K + L
Sbjct: 42 VNKQNLFTNIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHDSCYPDGRISTRSKLRWPLL 101
Query: 279 I*QILVIVAAID 314
I ++IV AID
Sbjct: 102 IIWCILIVFAID 113
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = -2
Query: 553 TGQVYLYGLIAGHI*RTLGGIVIMASTSRRQIYLVVILCCCEALLRFFEY 404
T V LYG I I RTL I + + R YL LC LR+ +Y
Sbjct: 420 TSWVNLYGWITCTIARTLSFIKL----NIRTFYLTAFLCALLNFLRYLKY 465
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 27.1 bits (57), Expect = 2.8
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
Frame = +2
Query: 392 GSPNIFEEPEQSFAAAENDNQIDLPSTSRSHDHDPSEGPL---DVPSD-EPIQI-DLAGP 556
G PN E+ + ++ N + + HD + L D+ S+ EP I D G
Sbjct: 16 GPPNTASFKEEEHSGSQTKNYPVVVKCIQEHDPVDTTNVLVADDLDSNFEPFSITDDYG- 74
Query: 557 LRYDND--DSNDTVLNIIINGPGHLPAQSEDSNLTSPLTSFSDESTRQSINE 706
+Y+N + T+LN N + S TSP + S +S R + E
Sbjct: 75 -KYENTLVSHSSTILNEPYNESPSSSSSDSSSRSTSPFSQLSSQSLRLNAEE 125
>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 563 YDNDDSNDTVLNIIINGPGHLPAQSEDSNLTSPLTSFSDESTRQSINEDSNS 718
Y +D + +++ G P +D+NLT+P T + + R+ + + S S
Sbjct: 181 YKEFSDDDPIQFPLLSVDGDSPLTEKDTNLTTPATLKASDQQRKVLEKPSVS 232
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.2 bits (55), Expect = 4.9
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
Frame = +2
Query: 410 EEPEQSFAAAENDNQIDLPSTSRSHDHDPSEGPLDVPSDEPIQIDLAGPLRYDNDDSNDT 589
++PE + E D ST R+H DV S EP++ + NDD +
Sbjct: 911 QKPEPALKPVEGT--ADPKSTKRNHQETEKTADTDVSSTEPVKRQKTADV---NDDVGEE 965
Query: 590 VLNIIIN---GPGHLPAQSEDSNLTSPLTSFSDESTRQSINEDSN 715
+ ++ L ++ + +L SD+++ E++N
Sbjct: 966 EVKQSVSEQVDSAQLTSEPKSESLPKSPEEKSDDTSNDVTTENTN 1010
>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -2
Query: 124 VIYVH*FMC*Y*LVLMFIVYYFLS 53
V+Y+ + C +L+F+VYY+L+
Sbjct: 2 VVYIVLYTCLAGFILLFLVYYYLT 25
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 8.5
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Frame = +2
Query: 395 SPNIFEEPEQSFAAAENDNQIDLPSTSRSHDHDPSEG-----PLDVPSDEPIQIDLAGPL 559
+P + Q F + + ST SH S P + + P + D P
Sbjct: 2 APRVAPGGSQQFLGKQGLKAKNPVSTPNSHFRSASNPRKRREPPTIDTGYPDRSDTNSPT 61
Query: 560 RYDNDDSNDTVLNIIINGPGHLPAQSEDSNLTSPLTS 670
+ D N+T +N+++ G + D++ + TS
Sbjct: 62 DHALHDENETNINVVVRVRGRTDQEVRDNSSLAVSTS 98
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 455 SGCHSLLLRSFAPVLRIYLDSP 390
S H L+++S+ +LR Y+D+P
Sbjct: 685 SDSHELIIKSWIELLRSYVDTP 706
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 524 DEPIQIDLAGPLRYDNDDSNDTVLNIIINGPGHLPAQ--SEDSNLTSPLTS 670
D P+ D A L ND+ N +LN + + P P + S+ S L P T+
Sbjct: 342 DAPMDADSA--LEIPNDEDNGEILNKLKDSPFKKPKRRYSKSSTLVLPETN 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,050
Number of Sequences: 5004
Number of extensions: 61231
Number of successful extensions: 214
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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