Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0198
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0505 - 4379722-4380795,4380868-4381008,4381099-4381270,438... 38 0.011
03_01_0586 - 4339090-4339194,4340186-4340366,4340531-4340601,434... 32 0.55
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 31 0.72
11_01_0062 - 476027-476044,476791-477195,477287-477574,477653-47... 31 1.3
03_05_0311 + 23014666-23014806,23015454-23015959,23016661-230170... 30 1.7
11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634 30 2.2
01_01_0195 + 1697447-1697691,1698150-1698808,1699754-1701570,170... 30 2.2
01_01_1067 + 8403584-8404195,8404532-8404693,8404837-8405346,840... 29 2.9
06_03_1475 - 30391555-30391890,30391982-30392233,30392358-303926... 29 3.9
11_01_0620 - 4964263-4965052,4965578-4965663,4966332-4966413,496... 28 6.7
09_03_0025 - 11665969-11666417,11666490-11666594,11666667-116668... 28 6.7
04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680 28 6.7
05_06_0186 - 26207298-26208548,26208743-26208853,26209286-262095... 28 8.9
02_01_0365 + 2621302-2621711,2622442-2622620,2623381-2623496,262... 28 8.9
>08_01_0505 - 4379722-4380795,4380868-4381008,4381099-4381270,
4381944-4382047,4382127-4382259,4384477-4384653,
4385164-4385309,4385536-4385625,4385703-4385915,
4386090-4386182,4386743-4386937,4387018-4387110,
4387924-4388019,4388556-4388985,4389424-4390091,
4392074-4392271,4392690-4393407,4394036-4394181
Length = 1628
Score = 37.5 bits (83), Expect = 0.011
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Frame = +2
Query: 410 EEPEQSFAAAENDNQIDLPSTSRSHDHDPSEGPLDVPSDEPIQIDLAGPLRYDNDDSNDT 589
E P++ + + +DLP ++ PS+ P D +Q + N S+
Sbjct: 1299 EHPDEDYESDTGLESLDLPEVPKAAIRPPSDTPATPDIDTHVQSSQPTSHEFSNMPSSQP 1358
Query: 590 VLNIIINGPGHLPAQSEDSNLTSPLTS---FSDESTRQ-SINEDSN 715
+ +N P P+ E SN+ S T+ FS+ T Q + +E SN
Sbjct: 1359 TSHEFLNMPSSQPSSHEFSNIKSSQTTSHEFSNVQTSQLASHEFSN 1404
>03_01_0586 -
4339090-4339194,4340186-4340366,4340531-4340601,
4340689-4340826,4341342-4342337
Length = 496
Score = 31.9 bits (69), Expect = 0.55
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = +2
Query: 359 PTAQSQG-TESPGSPNIFEEPEQSFAAAENDNQIDLPSTSRSHDHDPSEGPLDVPSDEPI 535
PT +++ T+ P S + FE S EN + DL S D +P D PS E
Sbjct: 221 PTLENKAATDEPDSVSTFEP--NSVIEPENLSLDDLDHIS---DDEPDASDTDEPSGEYD 275
Query: 536 QIDLAGPLRYDNDDSNDTVLNIIINGP 616
+ L P D+S+DT L + GP
Sbjct: 276 EPSLQIPSVPIIDESHDTTLKSSLGGP 302
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 31.5 bits (68), Expect = 0.72
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +2
Query: 350 SQYPTAQSQGTESP-GSPNIFEEPEQSFAAAENDNQIDLPSTSRSHDHDPSEGPLDVPSD 526
S+ P + T+SP GSP P +S + N+ P+ SRS S P+ S
Sbjct: 206 SRSPKGSPRDTQSPRGSPRDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADSR 265
Query: 527 EP 532
P
Sbjct: 266 SP 267
>11_01_0062 -
476027-476044,476791-477195,477287-477574,477653-477830,
478005-478133,478531-478729,478832-478970,479130-479195,
480459-480580,480672-480742,480819-480903,481335-481453,
481577-481687,481945-482117,482375-482446,482768-482862,
483361-483450,483550-483646
Length = 818
Score = 30.7 bits (66), Expect = 1.3
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 9/113 (7%)
Frame = +2
Query: 398 PNIFEEPEQ---SFAAAENDNQIDLPSTSRSHDHDPSEGPLDVPSDEPIQIDLAGPLRYD 568
P+ EE E S A +E+ + D+ + D EG P +Q+D + YD
Sbjct: 235 PSAAEEIESDIISLAQSEDSDVYDIYTVKEVDDDTTMEGTSSAPYPL-LQVDNGDDVCYD 293
Query: 569 NDDSNDT-----VLNIIINGPGHLPA-QSEDSNLTSPLTSFSDESTRQSINED 709
+DD DT N + + P L + +DSN +P + ED
Sbjct: 294 DDDPYDTDDSNAEDNPLYDYPAELSEDEDDDSNSENPFSDLDGSDPEYEKEED 346
>03_05_0311 +
23014666-23014806,23015454-23015959,23016661-23017051,
23017192-23017292,23017542-23017644,23018048-23018120,
23018244-23018659
Length = 576
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 359 PTAQSQGTESPGSPNIFEEPEQSFAAAENDNQIDLPSTSRSHDHDPSEGPLDVPSD 526
P A S + + + P Q +DN I P+ +R ++H PS P VP++
Sbjct: 4 PPASSPHQQCTPTRQAGDAPSQWMPPCLDDNDIATPTPNRVYNHGPSVPPHMVPTE 59
>11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634
Length = 795
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 569 NDDSNDTVLNIIINGPGHLPAQSEDSNLTSPLTSF 673
N +ND + + P +P++ ED+++T L SF
Sbjct: 157 NSSANDLLKQVYERAPDKVPSEGEDTDITKKLRSF 191
>01_01_0195 +
1697447-1697691,1698150-1698808,1699754-1701570,
1701700-1701771
Length = 930
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = -3
Query: 471 VDGRSIWLSFSAAAKLCSG-----SSNIFGLPGDSVPWLCAVGYWLIFRSHW 331
VDG +W+ + A+ C+G ++++ LP + PW+C + + + W
Sbjct: 442 VDG--LWIDMNEASNFCTGKCEIPTTHLCPLPNTTTPWVCCLDCKNLTNTRW 491
>01_01_1067 +
8403584-8404195,8404532-8404693,8404837-8405346,
8405434-8405493,8405721-8406137,8406576-8407100
Length = 761
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +2
Query: 554 PLRYDNDDSNDTVLNIIINGPGHLPAQSEDSNL---TSPLTSF--SDESTRQSINEDSNS 718
P ND ND + I+NG ++++ T+ +TS + E TRQ++ +D NS
Sbjct: 345 PFGSRNDGKNDPTIMAIVNGESGEGLTMDEASFVATTNSVTSMVAAKEETRQAVADDLNS 404
Query: 719 CAS 727
S
Sbjct: 405 SRS 407
>06_03_1475 -
30391555-30391890,30391982-30392233,30392358-30392619,
30393232-30393320,30393408-30393592,30393673-30393781,
30393886-30393942,30394047-30394196
Length = 479
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = -1
Query: 440 LLLRSFAPVLRIYLDSPVTLCPGSVRWDTGSFFVVIGLPFAQ 315
+++++ +L + L+S C G +W+ G + + L F+Q
Sbjct: 168 VIIKTICAILAVILESFGVYCEGEFKWNCGYSYTAVVLNFSQ 209
>11_01_0620 -
4964263-4965052,4965578-4965663,4966332-4966413,
4967052-4967156,4967600-4967772,4967988-4968101,
4973939-4974037,4974320-4974398,4975424-4975492,
4975955-4976061
Length = 567
Score = 28.3 bits (60), Expect = 6.7
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +2
Query: 452 QIDLPSTSRSHDHDPSEGPLDVPSDEPIQIDLAGPLRYDNDDSNDT--VLNIIIN--GPG 619
Q +LPS +S PS PS + A + Y + DS T V + IN P
Sbjct: 314 QGNLPSAPKSERPYPSPLLPPPPSSKRPVFTEASSVDYLSGDSYKTEKVSDDFINPTAPA 373
Query: 620 HLPAQSEDSNLTSPLTSFSDESTRQSINED 709
++PA S T+P S+ +S +S+++D
Sbjct: 374 NIPAPSHSKTETNPPPSY--DSRSESVSDD 401
>09_03_0025 -
11665969-11666417,11666490-11666594,11666667-11666856,
11666933-11667120,11667240-11667571,11667654-11667940,
11668027-11668911
Length = 811
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Frame = +2
Query: 401 NIFEEPEQSFAAAENDNQIDLPSTSRSHDHDPSEGPLDVPSDEPIQIDLA---GP----L 559
N F P Q +A ++D + + R H GP P +P LA GP L
Sbjct: 288 NAFNPPPQEYALMKSDPPVSQRRSPRQHTAQGGGGPTIRPDPQPQTSKLADQTGPRKRKL 347
Query: 560 RYDNDDSND 586
D+D+ +D
Sbjct: 348 VLDDDEGDD 356
>04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680
Length = 628
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 362 TAQSQGTESPGSPNIFEEPEQSFAAAENDNQIDLPSTSRSHDHDPSE 502
T + GT S SP + + E A +END + ++ S HD +P E
Sbjct: 458 TDAAHGTSSGTSP-LTGKTEPIDAKSENDPKCEIDSVQDGHDFNPRE 503
>05_06_0186 -
26207298-26208548,26208743-26208853,26209286-26209507,
26209623-26209658
Length = 539
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 419 EQSFAA-AENDNQIDLPSTSRSHDHDPSEGPLDVPSDEPIQIDLA 550
+Q F+ +E + ++PST + PSE D+ SDE I DLA
Sbjct: 306 QQMFSPISEGSRKEEIPSTGPTQSGKPSEASGDISSDE-ISKDLA 349
>02_01_0365 +
2621302-2621711,2622442-2622620,2623381-2623496,
2623626-2623964,2624113-2624307,2624505-2624594,
2625288-2625518,2625632-2625952
Length = 626
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +2
Query: 395 SPNIFEEPEQSFAAAENDNQIDLPSTSRSHDHDPSEGPLDVPSDEPIQID---LAGPLRY 565
S +IF+E + F + + Q L S D+DP E +E D PL
Sbjct: 234 SSDIFKEAAEHFNSDDGLGQDWLSEYSGDEDYDPEENEASSSGEENKSADSNCSGSPLYS 293
Query: 566 DNDDSNDTV 592
NDD D +
Sbjct: 294 PNDDIPDFI 302
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,350,990
Number of Sequences: 37544
Number of extensions: 391395
Number of successful extensions: 1165
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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