Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0198
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    27   0.18 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    27   0.18 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   4.0  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   5.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   6.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   6.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   6.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.9  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 144 NVTKSNHNEIKVK-TNGHQINVNNTFVKFYKQKIVSAQQ 257
           N   SN+N       N +  N NN + K YK  I++ +Q
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQ 126


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 144 NVTKSNHNEIKVK-TNGHQINVNNTFVKFYKQKIVSAQQ 257
           N   SN+N       N +  N NN + K YK  I++ +Q
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQ 126


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 144 NVTKSNHNEIKVKTNGHQINVNNTFVKFYKQKIVSAQQ 257
           N  K N+N      N +  N NN   K Y   I++ +Q
Sbjct: 327 NNYKYNYNNNNYNNNNYNNNYNNNCKKLY-YNIINIEQ 363


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = -1

Query: 644 CPRSEPGGVLVR***CSAPCRC-CHRC 567
           CPR++PG    R     AP  C C  C
Sbjct: 92  CPRAKPGEKKFRKVITKAPLECMCRPC 118


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 126 KLICLLNVTKSNHNEIKVKTNGHQINVNNTFVKFY 230
           K+I  L+  K+ HN    K N +  N NN   K Y
Sbjct: 80  KIISSLS-NKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 126 KLICLLNVTKSNHNEIKVKTNGHQINVNNTFVKFY 230
           K+I  L+  K+ HN    K N +  N NN   K Y
Sbjct: 80  KIISSLS-NKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 126 KLICLLNVTKSNHNEIKVKTNGHQINVNNTFVKFY 230
           K+I  L+  K+ HN    K N +  N NN   K Y
Sbjct: 80  KIISSLS-NKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -1

Query: 500 RRDRDHGFD*STADLSGCHS---LLLRSFAPVLRIYLDSPV 387
           RRD D G D +  D S C +   +L  S   + R+  +SP+
Sbjct: 193 RRDSDDGSDGNDGDESSCRADIRILDLSRNEITRLQENSPL 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,819
Number of Sequences: 438
Number of extensions: 4540
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)