Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0198
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43930.1 68418.m05374 transducin family protein / WD-40 repea...    29   2.4  
At5g27870.1 68418.m03343 pectinesterase family protein similar t...    29   2.4  
At5g52790.1 68418.m06551 CBS domain-containing protein-related c...    29   3.2  
At1g61450.1 68414.m06924 expressed protein contains similarity t...    28   5.6  
At1g06190.1 68414.m00651 expressed protein                             28   5.6  
At2g32590.1 68415.m03979 barren family protein low similarity to...    28   7.4  
At1g61095.1 68414.m06881 expressed protein                             28   7.4  
At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) / ovule...    27   9.8  
At2g29040.1 68415.m03530 exostosin family protein contains Pfam ...    27   9.8  
At2g01750.1 68415.m00104 expressed protein                             27   9.8  

>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
           sapiens]
          Length = 726

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 413 EPEQSFAAAENDNQIDLPSTSRSHDHDPSEGPLDVPSDEPIQIDL 547
           E  Q+  AAEN+N+   P    +    PS GP  VP + P  I L
Sbjct: 287 ESNQTSLAAENENRTSSPPLPLATSSGPS-GPNSVPGNSPSNIFL 330


>At5g27870.1 68418.m03343 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Salix gilgiana
           GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
           vulgaris SP|Q43111; contains Pfam profile PF01095
           pectinesterase
          Length = 732

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +2

Query: 389 PGSPNIFEEPEQSFAAAENDNQIDLPSTSRSHDHDPSEGPLDVPSDEPIQI 541
           P +P++   P  S  A    +  D PS+  S    P  G L  PSD P  +
Sbjct: 630 PATPSMVVSPSTSPPAGHLGSPSDTPSSLVSPSTSPPAGHLGSPSDTPSSV 680


>At5g52790.1 68418.m06551 CBS domain-containing protein-related
           contains Pfam profile PF01595: Domain of unknown
           function, weak hit to PF00571: CBS domain
          Length = 500

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 24/73 (32%), Positives = 34/73 (46%)
 Frame = +2

Query: 512 DVPSDEPIQIDLAGPLRYDNDDSNDTVLNIIINGPGHLPAQSEDSNLTSPLTSFSDESTR 691
           D+P     ++DL  PL YD       +LNI   G  H+ A     N T+  T   ++S  
Sbjct: 274 DLPIRRMPKVDLNLPL-YD-------ILNIFQTGRSHMAAVVGTKNHTNTNTPVHEKSIN 325

Query: 692 QSINEDSNSCASI 730
            S N+D+N   SI
Sbjct: 326 GSPNKDANVFLSI 338


>At1g61450.1 68414.m06924 expressed protein contains similarity to
           myosin II GI:1763303 from [Schizosaccharomyces pombe];
           expression supported by MPSS
          Length = 118

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 132 ICLLNVTKSNHNEIKVKTNGHQINVNNTFV 221
           IC L   +S H+E+  KTN   +N+NN  V
Sbjct: 88  ICCL---RSEHSELITKTNREAVNINNCIV 114


>At1g06190.1 68414.m00651 expressed protein
          Length = 401

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
 Frame = +2

Query: 482 HDHDPSE----GPLDVPSDEPIQIDLAGPLRYDNDDSNDTVLNIIINGPGHLPAQSEDSN 649
           H+H+P      GP+    +   ++       Y  ++ +D   +++    G L   S+D  
Sbjct: 285 HEHEPENESEPGPVTTMLEPDSELKPESSSFYQEEEDDDVTFDVLSQDDGILDVLSDDDE 344

Query: 650 LTSPLTSFSDESTRQSINE 706
                   SDE+  +++ +
Sbjct: 345 SLDDADEDSDEAEEEAVKD 363


>At2g32590.1 68415.m03979 barren family protein low similarity to
           SP|Q9Y7R3 Condensin complex subunit 2 (p105)
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF05786: Barren protein
          Length = 704

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 5/124 (4%)
 Frame = +2

Query: 353 QYPTAQSQGTESPGSPNIFEEPEQSFAAAENDNQIDLPSTSRSHDHDPSEGPLDVPSD-- 526
           Q P     G ES G+ N++++ +  F   END Q D   T+           +DV  D  
Sbjct: 548 QQPDDYEHG-ESWGNDNVYDDDDGPFDDNEND-QSDAEDTNTLISQPRQVNKIDVQYDKA 605

Query: 527 -EPIQIDLAGPLRYD--NDDSNDTVLNIIINGPGHLPAQSEDSNLTSPLTSFSDESTRQS 697
            + + + +     ++   +     + N+I+    H     E  +    L SF D+     
Sbjct: 606 SKQVDVQVLKETLWECLQESHQPPIQNLIVQDEEHQQEPPESRSFKVLLASFPDDCQAAE 665

Query: 698 INED 709
             +D
Sbjct: 666 RTQD 669


>At1g61095.1 68414.m06881 expressed protein
          Length = 125

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +2

Query: 581 NDTVLNIIINGPGHLPAQSEDSNLTSPLTSFSDESTRQSINEDSNSCASIR 733
           N+TV +I+   P ++P +S  S     + +  DE +R++   D+  CAS+R
Sbjct: 46  NETVNHIVQKFPSYVP-KSVRSFFQKSI-ALIDEESREAYLTDAEECASVR 94


>At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) /
           ovule-specific homeobox protein A20 nearly identical to
           meristem L1 layer homeobox protein A20 (AtML1)
           [Arabidopsis thaliana] GI:1881536, protodermal factor2
           (PDF2) [Arabidopsis thaliana] GI:14276060
          Length = 762

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 398 PNIFEEPEQSFAAAENDNQIDLPSTSRSHDHD-PSEGPLDVPSDEPIQIDLAGPLRYDN 571
           PN+FE     F     +++ DL  T  SH+ D  ++   +V  + P++ +L  P +  N
Sbjct: 4   PNMFESHHHMFDMTPKNSENDLGITG-SHEEDFETKSGAEVTMENPLEEELQDPNQRPN 61


>At2g29040.1 68415.m03530 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 720

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 446 DNQIDLPSTSRSHDHDPSEGPLDVPSDEPIQID 544
           +N IDLP  +   +H+P E P+     E I +D
Sbjct: 49  ENIIDLPVENVPQNHEPDEAPVVNVVSEDISVD 81


>At2g01750.1 68415.m00104 expressed protein 
          Length = 629

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 350 SQYPTAQS-QGTESPGSPNIFEEPEQSFAAAENDNQI 457
           S++P  QS +GT   GSPN  ++ +   AA  N++ +
Sbjct: 482 SKFPLNQSSEGTSGGGSPNSTKQGDSEKAAGTNNDSV 518


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,014,166
Number of Sequences: 28952
Number of extensions: 315937
Number of successful extensions: 942
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)