Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0196
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 154 1e-38
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 151 7e-38
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 60 4e-10
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 35 0.010
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 33 0.053
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 31 0.12
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 28 1.1
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 27 2.0
SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac... 27 2.6
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 3.5
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 26 4.6
SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces... 26 4.6
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 26 4.6
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 26 4.6
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 26 6.1
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 26 6.1
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 25 8.1
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 154 bits (373), Expect = 1e-38
Identities = 79/198 (39%), Positives = 123/198 (62%), Gaps = 2/198 (1%)
Frame = +2
Query: 125 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRV--NVIHARQQVRSPVTNIARTSFFHI 298
M +FV N KG+V+ISR YR DI + V+ F + + Q +P ++ +I
Sbjct: 1 MASAIFVLNLKGKVIISRDYRADIPMSVVEKFLPLKSEVEEEQGFSTPCLTHEGINYIYI 60
Query: 299 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDF 478
+++L A++K N +A + FL K+ DV YF ++ EE+I++NFVL+YELLDEI+DF
Sbjct: 61 HHNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEIMDF 120
Query: 479 GYPQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEY 658
G+PQ ++T +L+ +ITQ S + ++ A +T I WR EGI YR+NE+FLDV+E
Sbjct: 121 GFPQTTETKILQEYITQ---TSNTVKKHAPPPIAMTNAISWRSEGIHYRKNEVFLDVIES 177
Query: 659 VNLLMSPQGQVLSAHVAG 712
VNL+ + G V+ + + G
Sbjct: 178 VNLIAAADGTVIQSEILG 195
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 151 bits (367), Expect = 7e-38
Identities = 71/206 (34%), Positives = 126/206 (61%), Gaps = 10/206 (4%)
Frame = +2
Query: 125 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 304
MI GLF++N KG+ LI + +R D+ ++ + FRV ++ R P+ +I +++ + K
Sbjct: 1 MISGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAIL-TNTDYRHPIVSIGSSTYIYTKH 59
Query: 305 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 484
++++ A+TK N N +V EFL +I + YFGK++E +K+N I+ELLDE++D+G
Sbjct: 60 EDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMIDYGI 119
Query: 485 PQNSDTGVLKTFITQQGIK------SASKEEQAQI----TSQVTGQIGWRREGIKYRRNE 634
Q ++ L ++ +K S + +Q+ +S++ G + WRR GIKYR+N
Sbjct: 120 IQTTEPDALARSVSITAVKKKGNALSLKRSHSSQLAHTTSSEIPGSVPWRRAGIKYRKNS 179
Query: 635 LFLDVLEYVNLLMSPQGQVLSAHVAG 712
+++D++E +NLL+S G VL + V+G
Sbjct: 180 IYIDIVERMNLLISSTGNVLRSDVSG 205
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 59.7 bits (138), Expect = 4e-10
Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Frame = +2
Query: 308 NIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYP 487
++ L T + + + + +I+DV++++FG + ++ N +I +LL E++D+GY
Sbjct: 66 DVRLCIPTTCDTEPLYIHDIMRRIVDVVKTFFGGFNASKVEKNVCVIVQLLAEMIDYGYA 125
Query: 488 QNSDTGVLKTFITQQGIKS---ASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEY 658
+ L+ + + A Q + + WR KY NE F+ VLE
Sbjct: 126 TCMEPNALQDIVPLPSFMNKFMAVTGLQTNTPTLARDTVPWRTAKAKYATNEFFIHVLER 185
Query: 659 VNLLMSPQGQV 691
V+ + P G++
Sbjct: 186 VSAVYQPNGKL 196
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 35.1 bits (77), Expect = 0.010
Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +2
Query: 125 MIGGLFVYNHKGEVLISRVYR--DDIGRNAVDAFRVNVIHAR-QQVRSPVTNIARTSFFH 295
MI + + N G+ +S+ Y DD + + A +I R Q+ ++ + +
Sbjct: 1 MIQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVY 60
Query: 296 IKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 472
+ A ++ N + E + ++++ S+FG + E ++ NF + +LDEI+
Sbjct: 61 RRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEII 119
>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 240
Score = 32.7 bits (71), Expect = 0.053
Identities = 28/140 (20%), Positives = 57/140 (40%), Gaps = 2/140 (1%)
Frame = +2
Query: 143 VYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTS--FFHIKRANIW 316
+ N G+ +ISR +R+ + R V++ ++ A +S T + + F + ++
Sbjct: 8 IVNRGGKAIISRQFRE-MSRVRVESL-LSSFPALVSEKSQNTTVESDNVRFVYQPLDELY 65
Query: 317 LAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNS 496
+ +T N + L + V+ S + E I I+ DE GY N
Sbjct: 66 IVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLGYRDNV 125
Query: 497 DTGVLKTFITQQGIKSASKE 556
+KT++ + + +E
Sbjct: 126 SLTQIKTYLEMESHEEKIQE 145
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 31.5 bits (68), Expect = 0.12
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -3
Query: 494 NSEGNQSPRSHQATHRSEQSYS*CSLQKSCQNTIASHQ*SSTGTQIPWPRSHFAL 330
+S + RS AT +S++S S + S T S+ ++ TQ+ WP +H L
Sbjct: 719 DSGSRRVTRSQNATSQSQESGS--EIGSSIAGTAGSYNVGTSNTQLSWPSTHSTL 771
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/46 (26%), Positives = 29/46 (63%)
Frame = +2
Query: 293 HIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIK 430
+I+ N + + +++ + A++ E +++DV QS+ G + EEN++
Sbjct: 414 NIEITNPIIVSPVERSRSQALLNEIQTRVLDVRQSHGGVVLEENVR 459
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = -1
Query: 226 HSECVHSITTNIISVDSRDQHLAFMVINEQAPDHCG*GLTLFQNWFQCNC 77
H +C + T IS S + IN + P H + NW C+C
Sbjct: 442 HKKCYPKVVTKCISKSSDSASSEYEKINHRIPHHFESHTNIGANWC-CHC 490
>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 27.1 bits (57), Expect = 2.6
Identities = 21/127 (16%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Frame = +2
Query: 125 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPV------TNI--AR 280
MI +F++N+KG+ +++ Y ++ + I+A R P +N+ +
Sbjct: 1 MIYAVFIFNNKGKPRLTKFYTPI--DESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGK 58
Query: 281 TSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELL 460
+ + A ++ V + + + + + ++ + F + E ++ F I+ +L
Sbjct: 59 NRIIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAIL 118
Query: 461 DEILDFG 481
E++ G
Sbjct: 119 AEVVSGG 125
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 392 QSYFGKISEENIKNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQ 532
+ + KI EE +K N +L YE D +S ++KTF Q
Sbjct: 952 KDFVTKIEEETLKENPLLFYEYRKASSDMRVLMDSQFLMMKTFARLQ 998
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 26.2 bits (55), Expect = 4.6
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Frame = +2
Query: 215 AFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQ 394
+ RVN+ + +S +N + T+ +H++ + + +A+VFEF K +
Sbjct: 839 SIRVNIAGVKITAKSSTSNSSSTAEYHVRSRHAVIP--VNNRYRSAVVFEF-RKQLQRKH 895
Query: 395 SYFGKI----SEENIKNNF-VLIY------ELLDEILDFGYP 487
+ F + E+N++ N V I+ +L ++DF +P
Sbjct: 896 NVFAMVWLVDLEDNVEQNIRVPIFTSSKPAHVLQNMIDFDHP 937
>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 386 VMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNS 496
V++++ G+I+++ ++ V+IY + D L FG S
Sbjct: 113 VLKAHVGRITDDTPQHQGVVIYSMNDTPLGFGVTARS 149
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 26.2 bits (55), Expect = 4.6
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -1
Query: 331 CDCCQPNICTLDMEERCACNVGNR 260
C C +C L +E C C++ N+
Sbjct: 675 CSCKSITVCPLHIEYLCKCDLSNK 698
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -3
Query: 515 SSGPQYQNSEGNQSPRSHQATHRSEQSYS*CSLQKSCQNTIASHQ*SSTGTQIP 354
SS P +SE NQ P S Q +Y+ ++ S + SS+GT P
Sbjct: 10 SSRPPSVHSERNQKPSSSQFLGVPSSNYNQRENSSRSGSSTISREPSSSGTMYP 63
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 249 RCDHLLPTLHAHLSSISSVQIFGWQQSQSKM*TR 350
RC + +L H+S + SV + W Q++ TR
Sbjct: 51 RCSGVHRSLGVHVSRVKSVDLDSWTDEQTENMTR 84
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 41 YVQFLKGCNR*IAITLKPILKECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVD 214
+V ++ G R I + L P+L PT+ +NH G++ + R + G N+ D
Sbjct: 737 HVSYVTGVIRSIDLQL-PVLLSKFMKPTIFDSYDFFNHWGQMGVEREAQLTFGLNSKD 793
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 252 CDHLLPTLHAHLSSISSVQIF 314
CD L+ LHA L SSV +F
Sbjct: 118 CDRLVRQLHASLEDASSVGLF 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,487
Number of Sequences: 5004
Number of extensions: 61127
Number of successful extensions: 177
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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