Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0196
(712 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46630.2 68418.m05740 clathrin adaptor complexes medium subun... 199 1e-51
At5g46630.1 68418.m05741 clathrin adaptor complexes medium subun... 199 1e-51
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun... 149 2e-36
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun... 148 3e-36
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun... 115 4e-26
At4g24550.1 68417.m03518 clathrin adaptor complexes medium subun... 115 4e-26
At1g56590.1 68414.m06508 clathrin adaptor complexes medium subun... 87 1e-17
At4g35410.2 68417.m05030 clathrin adaptor complex small chain fa... 44 1e-04
At2g17380.1 68415.m02007 clathrin assembly protein AP19 identica... 42 5e-04
At5g23700.1 68418.m02778 hypothetical protein 30 1.3
At4g20060.1 68417.m02935 expressed protein ; expression support... 29 2.3
At3g11450.1 68416.m01396 DNAJ heat shock N-terminal domain-conta... 28 7.0
At2g19790.1 68415.m02312 clathrin adaptor complex small chain fa... 28 7.0
At5g01270.1 68418.m00036 double-stranded RNA-binding domain (DsR... 27 9.3
At3g22790.1 68416.m02873 kinase interacting family protein simil... 27 9.3
At3g11460.1 68416.m01397 pentatricopeptide (PPR) repeat-containi... 27 9.3
At2g42720.1 68415.m05291 F-box family protein contains F-box dom... 27 9.3
>At5g46630.2 68418.m05740 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 441
Score = 199 bits (486), Expect = 1e-51
Identities = 94/204 (46%), Positives = 138/204 (67%), Gaps = 6/204 (2%)
Frame = +2
Query: 119 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHI 298
P ++ N +G+VLI+R YRDD+G N VDAFR +++ ++ PV I SF ++
Sbjct: 2 PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHIMQTKELGNCPVRQIGGCSFVYM 61
Query: 299 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYF-GKISEENIKNNFVLIYELLDEILD 475
+ +N+++ V N N A F+F+++ + + +SYF G E+ I+NNFVLIYELLDEI+D
Sbjct: 62 RISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMD 121
Query: 476 FGYPQNSDTGVLKTFITQQGIKS--ASKEEQAQI---TSQVTGQIGWRREGIKYRRNELF 640
FGYPQN +LK +ITQ+G++S +SK + + T QVTG +GWRREG+ Y++NE+F
Sbjct: 122 FGYPQNLSPEILKLYITQEGVRSPFSSKPKDKPVPNATLQVTGAVGWRREGLAYKKNEVF 181
Query: 641 LDVLEYVNLLMSPQGQVLSAHVAG 712
LD++E VNLLMS +G VL V G
Sbjct: 182 LDIVESVNLLMSSKGNVLRCDVTG 205
>At5g46630.1 68418.m05741 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 438
Score = 199 bits (486), Expect = 1e-51
Identities = 94/204 (46%), Positives = 138/204 (67%), Gaps = 6/204 (2%)
Frame = +2
Query: 119 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHI 298
P ++ N +G+VLI+R YRDD+G N VDAFR +++ ++ PV I SF ++
Sbjct: 2 PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHIMQTKELGNCPVRQIGGCSFVYM 61
Query: 299 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYF-GKISEENIKNNFVLIYELLDEILD 475
+ +N+++ V N N A F+F+++ + + +SYF G E+ I+NNFVLIYELLDEI+D
Sbjct: 62 RISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMD 121
Query: 476 FGYPQNSDTGVLKTFITQQGIKS--ASKEEQAQI---TSQVTGQIGWRREGIKYRRNELF 640
FGYPQN +LK +ITQ+G++S +SK + + T QVTG +GWRREG+ Y++NE+F
Sbjct: 122 FGYPQNLSPEILKLYITQEGVRSPFSSKPKDKPVPNATLQVTGAVGWRREGLAYKKNEVF 181
Query: 641 LDVLEYVNLLMSPQGQVLSAHVAG 712
LD++E VNLLMS +G VL V G
Sbjct: 182 LDIVESVNLLMSSKGNVLRCDVTG 205
>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 149 bits (361), Expect = 2e-36
Identities = 71/194 (36%), Positives = 118/194 (60%), Gaps = 2/194 (1%)
Frame = +2
Query: 137 LFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR--QQVRSPVTNIARTSFFHIKRAN 310
LF+ + KG VL+ R YR D+ + F +I Q PV ++ ++ +N
Sbjct: 8 LFLLDIKGRVLVWRDYRGDVSAAQAERFFTKLIEKEGDSQSNDPVAYDNGVTYMFVQHSN 67
Query: 311 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQ 490
++L ++QN NAA + FL +++DV + YF ++ EE++++NFV++YELLDE++DFGYPQ
Sbjct: 68 VYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQ 127
Query: 491 NSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLL 670
++ +L FI + E + VT + WR EGI+Y++NE+FLDV+E VN+L
Sbjct: 128 YTEARILSEFIKTDAYR---MEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVIENVNIL 184
Query: 671 MSPQGQVLSAHVAG 712
++ GQ++ + V G
Sbjct: 185 VNSNGQIVRSDVVG 198
>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 148 bits (359), Expect = 3e-36
Identities = 71/194 (36%), Positives = 118/194 (60%), Gaps = 2/194 (1%)
Frame = +2
Query: 137 LFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR--QQVRSPVTNIARTSFFHIKRAN 310
LF+ + KG VL+ R YR D+ + F +I Q PV ++ ++ +N
Sbjct: 8 LFLLDIKGRVLVWRDYRGDVTAAQAERFFTKLIETEGDSQSNDPVAYDNGVTYMFVQHSN 67
Query: 311 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQ 490
I+L ++QN NAA + FL +++DV + YF ++ EE++++NFV++YELLDE++DFGYPQ
Sbjct: 68 IYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQ 127
Query: 491 NSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLL 670
++ +L FI + E + VT + WR EG+K+++NE+FLDV+E VN+L
Sbjct: 128 FTEARILSEFIKTDAYR---MEVTQRPPMAVTNSVSWRSEGLKFKKNEVFLDVIESVNIL 184
Query: 671 MSPQGQVLSAHVAG 712
++ GQ++ + V G
Sbjct: 185 VNSNGQIVRSDVVG 198
>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 451
Score = 115 bits (276), Expect = 4e-26
Identities = 62/211 (29%), Positives = 115/211 (54%), Gaps = 15/211 (7%)
Frame = +2
Query: 125 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS---PVTNIARTSFFH 295
MI FV + +G+ ++ R YR ++ + + + F V ++ + P+ N+ ++FH
Sbjct: 2 MISQFFVLSQRGDNIVFRDYRAEVPKGSTETFFRKVKFWKEDGNAEAPPIFNVDGVNYFH 61
Query: 296 IKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILD 475
+K ++ A T+ NV+ ++V E L +I V++ Y G ++E++ + NFVL+YELLDE++D
Sbjct: 62 VKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEVID 121
Query: 476 FGYPQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKY----------- 622
FGY Q + T VLK++I + I + Q + + Q R G
Sbjct: 122 FGYVQTTSTEVLKSYIFNEPIVVSPARLQPIDPAAIFTQGAKRMPGTAVTKSVVANDPGG 181
Query: 623 -RRNELFLDVLEYVNLLMSPQGQVLSAHVAG 712
RR E+F+D++E +++ S G +L++ + G
Sbjct: 182 RRREEIFVDIIEKISVTFSSSGYILTSEIDG 212
>At4g24550.1 68417.m03518 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 380
Score = 115 bits (276), Expect = 4e-26
Identities = 62/211 (29%), Positives = 115/211 (54%), Gaps = 15/211 (7%)
Frame = +2
Query: 125 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS---PVTNIARTSFFH 295
MI FV + +G+ ++ R YR ++ + + + F V ++ + P+ N+ ++FH
Sbjct: 2 MISQFFVLSQRGDNIVFRDYRAEVPKGSTETFFRKVKFWKEDGNAEAPPIFNVDGVNYFH 61
Query: 296 IKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILD 475
+K ++ A T+ NV+ ++V E L +I V++ Y G ++E++ + NFVL+YELLDE++D
Sbjct: 62 VKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEVID 121
Query: 476 FGYPQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKY----------- 622
FGY Q + T VLK++I + I + Q + + Q R G
Sbjct: 122 FGYVQTTSTEVLKSYIFNEPIVVSPARLQPIDPAAIFTQGAKRMPGTAVTKSVVANDPGG 181
Query: 623 -RRNELFLDVLEYVNLLMSPQGQVLSAHVAG 712
RR E+F+D++E +++ S G +L++ + G
Sbjct: 182 RRREEIFVDIIEKISVTFSSSGYILTSEIDG 212
>At1g56590.1 68414.m06508 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 415
Score = 87.0 bits (206), Expect = 1e-17
Identities = 53/206 (25%), Positives = 100/206 (48%), Gaps = 10/206 (4%)
Frame = +2
Query: 125 MIGGLFVYNHKGEVLISRVYRDD-IGRNAVDAFRVNVIHARQQVRS-PVTNIARTSFFHI 298
M+ +F+ + GEV++ + + R+ F I ++ PV F I
Sbjct: 1 MLQCIFLISDSGEVMLEKQLTGHRVDRSICAWFWDQYISQGDSFKALPVIASPTHYLFQI 60
Query: 299 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDF 478
R I A ++ + M EFL ++ DV+ Y G ++E+ IK+NF+++YELLDE++D
Sbjct: 61 VRDGITFLACSQVEMPPLMAIEFLCRVADVLSEYLGGLNEDLIKDNFIIVYELLDEMIDN 120
Query: 479 GYPQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQ--------IGWRREGIKYRRNE 634
G+P ++ +LK I + S S V+ + WR KY NE
Sbjct: 121 GFPLTTEPSILKEMIAPPNLVSKMLSVVTGNASNVSDTLPSGAGSCVPWRPTDPKYSSNE 180
Query: 635 LFLDVLEYVNLLMSPQGQVLSAHVAG 712
+++D++E ++ +++ G+++ + G
Sbjct: 181 VYVDLVEEMDAIVNRDGELVKCEIYG 206
>At4g35410.2 68417.m05030 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 162
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +2
Query: 305 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 484
A+++ Q N V E + ++++ YFG + E ++ NF Y +LDE+L G
Sbjct: 63 ASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGE 122
Query: 485 PQNSDTGVLKTFIT-QQGIKSASKEEQAQITS 577
Q S + I+ Q + +KEE + I++
Sbjct: 123 LQESSKKTVARIISAQDQLVEVAKEEASSISN 154
>At2g17380.1 68415.m02007 clathrin assembly protein AP19 identical
to clathrin assembly protein AP19 GI:2231698 from
[Arabidopsis thaliana]
Length = 161
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +2
Query: 305 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 484
A+++ + N V E + ++++ YFG + E ++ NF Y +LDE+L G
Sbjct: 63 ASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGE 122
Query: 485 PQNSDTGVLKTFIT-QQGIKSASKEEQAQITS 577
Q S + I+ Q + +KEE + I++
Sbjct: 123 LQESSKKTVARIISAQDQLVEVAKEEASSISN 154
>At5g23700.1 68418.m02778 hypothetical protein
Length = 572
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -2
Query: 225 TLNASTALRPISSR*TLEINTSPLWL*TN---KPPIIVGEASHSFK 97
++ +S+ RP + + N SPLW+ KPP+I+ HSFK
Sbjct: 118 SVRSSSTGRPSTFSRSSTPNASPLWMPPKASLKPPVIIPPIDHSFK 163
>At4g20060.1 68417.m02935 expressed protein ; expression supported by
MPSS
Length = 1134
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = -1
Query: 475 VQDLIKQL--IDQNKVI-LDVLFRNLAKIRLHHINDLQQELKYHGRVHILLCDCCQPNIC 305
V+DL+++L +D N L++L + H+ Q L+ G+V +LL C C
Sbjct: 844 VEDLVRRLWKVDPNVCEKLNILVNTNESLNCFHLQSRNQVLRVCGKVKMLLSICRDALSC 903
Query: 304 TLDMEER 284
T ++ +
Sbjct: 904 TYGLQNQ 910
>At3g11450.1 68416.m01396 DNAJ heat shock N-terminal
domain-containing protein / cell division
protein-related similar to GlsA [Volvox carteri f.
nagariensis] GI:4633129; contains Pfam profiles PF00226
DnaJ domain, PF00249 Myb-like DNA-binding domain
Length = 663
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 675 DINKLTYSSTSRNSSFRLYLMPSRR 601
D N+ YS R SS++L++MPSRR
Sbjct: 6 DRNQGGYSLGVRCSSYKLFIMPSRR 30
>At2g19790.1 68415.m02312 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 143
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/114 (16%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Frame = +2
Query: 137 LFVYNHKGEVLISRVYR--DDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRAN 310
+ + N +G+ +++ Y R A++ V AR + + + A+
Sbjct: 6 ILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRRYAS 65
Query: 311 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 472
++ + N + EF+ +++ M +FG + E +I + + +L+E++
Sbjct: 66 LFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMV 119
>At5g01270.1 68418.m00036 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 771
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -1
Query: 232 HIHSECVHSITTNIISVDSRDQHLAFMVINEQ 137
H+H+ C H + T ++ + + HL M E+
Sbjct: 81 HLHAVCFHELKTAVVMLGDEEIHLVAMPSKEK 112
>At3g22790.1 68416.m02873 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1694
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 524 TQQGIKSASKEEQAQITSQVTGQIGWRRE 610
T Q + S S+EEQ ITS++ +IG R+
Sbjct: 451 TLQSLYSQSQEEQKVITSELQSRIGMLRD 479
>At3g11460.1 68416.m01397 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 623
Score = 27.5 bits (58), Expect = 9.3
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 491 NSDTGVLKTFITQQGIKSASKEEQAQITSQ--VTGQIGWRREGIKYRRNELFLDVLEYVN 664
+S+ VL +FIT +K S E ++ + V G I W Y +N L DVLE
Sbjct: 188 DSEVAVLNSFITMY-MKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYE 246
Query: 665 LLMS 676
+ S
Sbjct: 247 QMKS 250
>At2g42720.1 68415.m05291 F-box family protein contains F-box domain
Pfam:PF00646
Length = 443
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -1
Query: 526 SDECLQDPSIRILRVTKVQDLIKQLIDQNKVILDVLFRNLAKIR 395
S CL +++L + Q K+L ++ + F L KIR
Sbjct: 370 SSSCLSSSRVKVLEIWSYQGTSKELKQMGHFLMKLQFLELVKIR 413
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,465,387
Number of Sequences: 28952
Number of extensions: 322495
Number of successful extensions: 806
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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