Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0195
         (560 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   1.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   1.4  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   4.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   5.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   5.5  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   7.2  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 225 GDQAGFIRHSACDPRRRSRPFPREHPSQGQRPQG 326
           G Q G   H    P ++  P  ++ P+QGQ+P G
Sbjct: 191 GGQQGANMHQQGPPHQQ--PPIQQQPNQGQQPPG 222


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 225 GDQAGFIRHSACDPRRRSRPFPREHPSQGQRPQG 326
           G Q G   H    P ++  P  ++ P+QGQ+P G
Sbjct: 193 GGQQGANMHQQGPPHQQ--PPIQQQPNQGQQPPG 224


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +2

Query: 104 LYKMVQRTFPP-HHRGTLKW 160
           LYK +++ FPP    G L W
Sbjct: 286 LYKKIKKAFPPLSLHGQLLW 305


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 439 IVRDIALSIAQNAPKAIVAII 501
           ++ D+ALS  QN P  I+  I
Sbjct: 197 VISDLALSKCQNTPIGILGRI 217


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 439 IVRDIALSIAQNAPKAIVAII 501
           ++ D+ALS  QN P  I+  I
Sbjct: 197 VISDLALSKCQNTPIGILGRI 217


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 419 RSSRVIPGLRGTPAGMTTTSASLM 348
           RS+  IPG   TP   T  S  +M
Sbjct: 85  RSAGSIPGASSTPENKTFPSIQVM 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.315    0.131    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,869
Number of Sequences: 336
Number of extensions: 3054
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)