Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0195
(560 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch... 157 1e-39
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 53 3e-08
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 28 0.82
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 27 1.9
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 26 3.3
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 4.4
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 25 5.8
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe... 25 5.8
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 7.6
>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 341
Score = 157 bits (381), Expect = 1e-39
Identities = 80/147 (54%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Frame = +1
Query: 121 KNFSTTSQRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHVNT 300
++FSTTS R FK IGQPL++LLK N V+ LAL+DI PGVAAD+ H+NT
Sbjct: 19 RSFSTTSSRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGA-PGVAADIGHINT 77
Query: 301 PAKVSGHKGPEE-LSAAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQNA 477
+ V G+ ++ L A+ ADVV+IPAGVPRKPGMTRDDLF TNASIVRD+A + +
Sbjct: 78 TSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAFAAGETC 137
Query: 478 PKAIVAIITNPVNSTVPIASEVLGKSG 558
P+A ++TNPVNSTVPI + L + G
Sbjct: 138 PEAKYLVVTNPVNSTVPIFKKALERVG 164
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 52.8 bits (121), Expect = 3e-08
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Frame = +1
Query: 115 GAKNFSTTSQRN--FKXXXXXXXXX--IGQPLALLLKQNPLVTRLALYDI-APVTPGVAA 279
G+K FS S R+ FK +G A L + L + + D+ G A
Sbjct: 4 GSKVFSNDSVRSSSFKSIKIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAM 63
Query: 280 DLSHVNTPAKVSGHKGPEELS--AAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDI 453
DL+H A +S H+ L KDA VVI AG +KPG TR DL N SI ++I
Sbjct: 64 DLNHA---APLS-HETRVYLGDYKDCKDATAVVITAGKNQKPGETRMDLLKANISIFKEI 119
Query: 454 ALSIAQNAPKAIVAIITNPVN 516
+ + AI+ + TNPV+
Sbjct: 120 LREVTKYTKDAILLVATNPVD 140
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 28.3 bits (60), Expect = 0.82
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 471 LSNGQSNVTDNGSISVE*VITGHSRFTGYSCW 376
L NG + D + SV V+TGH+R CW
Sbjct: 43 LVNGSVVIWDLSTFSVSRVLTGHTRAIQSVCW 74
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 99 PCCTKWCKELFHHITEEL*SGGRWCR 176
P C WC ++ IT+ + G WCR
Sbjct: 319 PDCKSWCGIIYQFITDS--NVGMWCR 342
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 3.3
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = +3
Query: 156 SGGRWCRRWYRPAFGPSTEAESSG-DQAGFIRHSACDPRRRSRPFPREHPSQGQRP 320
S G W RR P P+ +G R A DP R R PRE +G P
Sbjct: 179 STGDWVRRGPLPPAEPAESPFGKRRTNSGRFRDPARDPSDRVREEPREWVRRGPLP 234
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 87 KTCRPCCTKWCKELFHHITEEL*SGGRWCRRWY 185
K C+ C + C+ +HHI E+L CRR Y
Sbjct: 33 KPCQ-CGYRVCRFCWHHIKEDLNGRCPACRRLY 64
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 52 RVYTCIFELFPPDPPD 5
RV T + LFPPDP D
Sbjct: 199 RVKTALSALFPPDPKD 214
>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 25.4 bits (53), Expect = 5.8
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 241 LYDIAPVTPGVAADLSHVNTPAKVSGHKGPEELSAA 348
L + APV G A S + V+G GP ELS A
Sbjct: 12 LINSAPVILGYALQNSLQTSSVIVTGRLGPSELSVA 47
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.0 bits (52), Expect = 7.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 223 LVTRLALYDIAPVTPGVAADLSHVNTPAKVSGHKGPEELSAAI 351
++ RLALY+ A V P + + + + + SG+ +E SA +
Sbjct: 586 IIGRLALYNPAHVMPSLRKTIIQLLSDMEYSGNSRQKEESAQL 628
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.131 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,335,953
Number of Sequences: 5004
Number of extensions: 48817
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -