Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0195
(560 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002197-5|AAB53985.1| 341|Caenorhabditis elegans Malate dehydr... 192 1e-49
AF067942-1|AAG45570.1| 488|Caenorhabditis elegans Hypothetical ... 34 0.061
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr... 31 0.57
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr... 31 0.57
Z70038-3|CAA93883.2| 541|Caenorhabditis elegans Hypothetical pr... 29 3.0
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 27 7.0
Z81129-1|CAB03408.1| 350|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z50863-2|CAA90737.1| 351|Caenorhabditis elegans Hypothetical pr... 27 9.2
CU457740-8|CAM36338.1| 362|Caenorhabditis elegans Hypothetical ... 27 9.2
AL117204-1|CAB55141.1| 328|Caenorhabditis elegans Hypothetical ... 27 9.2
>AF002197-5|AAB53985.1| 341|Caenorhabditis elegans Malate
dehydrogenase protein 1 protein.
Length = 341
Score = 192 bits (469), Expect = 1e-49
Identities = 93/125 (74%), Positives = 110/125 (88%)
Frame = +1
Query: 184 IGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHVNTPAKVSGHKGPEELSAAIKDAD 363
IGQPL LLLKQ+PLV LALYD+ TPGVAADLSH+++ AKV+ H GP+EL AA+++AD
Sbjct: 40 IGQPLGLLLKQDPLVAHLALYDVVN-TPGVAADLSHIDSNAKVTAHTGPKELYAAVENAD 98
Query: 364 VVVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQNAPKAIVAIITNPVNSTVPIASEV 543
V+VIPAGVPRKPGMTRDDLFNTNA IVRD+A IA+ +PKA++AIITNPVNSTVPIASEV
Sbjct: 99 VIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAIITNPVNSTVPIASEV 158
Query: 544 LGKSG 558
L K+G
Sbjct: 159 LKKAG 163
>AF067942-1|AAG45570.1| 488|Caenorhabditis elegans Hypothetical
protein ZK6.8 protein.
Length = 488
Score = 34.3 bits (75), Expect = 0.061
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 113 FCTARAAGFRARENIFVVC-LTCIYVYI*TIST*PSRP 3
FC+ R F R +F+ C LTC+Y + IST P+ P
Sbjct: 320 FCSKRIKNFGMRPTMFIGCFLTCLYCALVVISTPPTAP 357
>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
C23F12.1a protein.
Length = 2329
Score = 31.1 bits (67), Expect = 0.57
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +1
Query: 214 QNPLVT-RLALYDIAPVTPGVAADLSHVNTPAKVS---GHKGPEELSAAIKDADVVVIPA 381
Q+PL + +YD + + G + S++N + + G G L AIKDAD V+IP+
Sbjct: 980 QHPLSPFAVRVYDASEIIVGEIPNQSNLNDTVEFTVDAGRAGFGNLEMAIKDADGVIIPS 1039
Query: 382 GV 387
V
Sbjct: 1040 HV 1041
>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
C23F12.1b protein.
Length = 2747
Score = 31.1 bits (67), Expect = 0.57
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +1
Query: 214 QNPLVT-RLALYDIAPVTPGVAADLSHVNTPAKVS---GHKGPEELSAAIKDADVVVIPA 381
Q+PL + +YD + + G + S++N + + G G L AIKDAD V+IP+
Sbjct: 980 QHPLSPFAVRVYDASEIIVGEIPNQSNLNDTVEFTVDAGRAGFGNLEMAIKDADGVIIPS 1039
Query: 382 GV 387
V
Sbjct: 1040 HV 1041
>Z70038-3|CAA93883.2| 541|Caenorhabditis elegans Hypothetical
protein ZK1067.4 protein.
Length = 541
Score = 28.7 bits (61), Expect = 3.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 151 SSSVMWWKSSLHHFVQQGRQV 89
S ++WWKS +H+ ++ RQV
Sbjct: 120 SPPIVWWKSVCYHYTRKTRQV 140
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -1
Query: 413 SRVIPGLRGTPAGMTTTSASLMAADSSSGPLWPLTLAGVFTWERSAATPGVTGAMSYKAS 234
S+ PG+ GMTT+ ASL + +S + G FT + GAM+ +S
Sbjct: 418 SQTTPGVSSASTGMTTSQASLRSTQNS-----VTSTPGSFTVTSTPTITSTQGAMASSSS 472
>Z81129-1|CAB03408.1| 350|Caenorhabditis elegans Hypothetical
protein T23F1.3 protein.
Length = 350
Score = 27.1 bits (57), Expect = 9.2
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +2
Query: 167 LVPPVVSASLWPFY*SRILW*PGWLYT 247
+ P ++ +WP+ + W GWLY+
Sbjct: 265 IAPTLLVPLIWPYLKIEVSWQTGWLYS 291
>Z50863-2|CAA90737.1| 351|Caenorhabditis elegans Hypothetical
protein C14H10.4 protein.
Length = 351
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 167 LVPPVVSASLWPFY*SRILW*PGWLYT 247
L+ PVV AS + F+ S+ W GWLY+
Sbjct: 265 LLCPVV-ASFFHFFFSKFSWQTGWLYS 290
>CU457740-8|CAM36338.1| 362|Caenorhabditis elegans Hypothetical
protein C50E10.8 protein.
Length = 362
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = -1
Query: 401 PGLRGTPAGMTTTSASLMAADSSSGPLWPLTLAGVFTW 288
P RG P T + MA S WPL L G TW
Sbjct: 97 PVTRGLP--WWTCDVAKMARLDSISSAWPLFLGGALTW 132
>AL117204-1|CAB55141.1| 328|Caenorhabditis elegans Hypothetical
protein Y116A8C.1 protein.
Length = 328
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 146 LCDVVEKFFAPFCTARAAG 90
+C + FF PFC RAAG
Sbjct: 164 VCISIRTFFGPFCQNRAAG 182
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.131 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,420,145
Number of Sequences: 27780
Number of extensions: 304563
Number of successful extensions: 890
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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