Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0195
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   8.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   8.5  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 210 EAESSGDQAGFIRHSACDPRRRSRPFPRE 296
           E    G   G+     CD R++  P PR+
Sbjct: 154 ELSQPGSLNGYGSSDGCDARKKKGPTPRQ 182


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -1

Query: 386 TPAGMTTTSASLMAADSSSGPLWPLTLAGVFTWERSAA--TPGVT 258
           TPA +TTT A+     +S+    P T + V     + A  T G T
Sbjct: 215 TPATVTTTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGTT 259


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +3

Query: 198 GPSTEAE-SSGDQAGFIRHSACDPRRRSRPFPREHPSQGQR 317
           GP++    ++G  +  +  S     +   P+P  HP  G +
Sbjct: 67  GPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSK 107


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +3

Query: 198 GPSTEAE-SSGDQAGFIRHSACDPRRRSRPFPREHPSQGQR 317
           GP++    ++G  +  +  S     +   P+P  HP  G +
Sbjct: 67  GPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSK 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.131    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,708
Number of Sequences: 438
Number of extensions: 3843
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)