Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0194
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 264 1e-71
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 254 8e-69
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 40 5e-04
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 33 0.034
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 32 0.10
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 30 0.32
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 29 0.97
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 27 3.0
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 26 5.2
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe... 26 5.2
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 26 6.8
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 264 bits (647), Expect = 1e-71
Identities = 121/245 (49%), Positives = 174/245 (71%), Gaps = 2/245 (0%)
Frame = +3
Query: 3 GVVKPLLSLIKSDIPIPFLRNVTWVIVNLCRSKDPPPPLKTIQEILPALNVLILHNDSSV 182
GV++PLL++I+S+ + LRN TW + N+CR K+P P +I +++P L+ LI D V
Sbjct: 205 GVLEPLLNIIESNRRLSMLRNSTWTLSNMCRGKNPQPDWNSISQVIPVLSKLIYTLDEDV 264
Query: 183 LVDTVWAISYLTDGGNEQIQMVIESGIVTTLIPLLSHKEVKVQTAALRAVGNIVTGTDEQ 362
LVD +WAISYL+DG NE+IQ +I++GI L+ LL H +VQT ALR+VGNIVTG D Q
Sbjct: 265 LVDALWAISYLSDGANEKIQAIIDAGIPRRLVELLMHPSAQVQTPALRSVGNIVTGDDVQ 324
Query: 363 TQVVLNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNKQQVQAVIDAGLLPMIVANLS 542
TQV++NC ALS +LL+ P++ + KEA W +SNITAGN Q+Q VI+A ++P ++ L+
Sbjct: 325 TQVIINCGALSALLSLLSSPRDGVRKEACWTISNITAGNSSQIQYVIEANIIPPLIHLLT 384
Query: 543 KGEFQTQKEAAWAVSNLSISGTR--DQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLS 716
+F+ QKEA WA+SN + G R DQ+ L+ G I P CNLL+C+D ++I V LDG+
Sbjct: 385 TADFKIQKEACWAISNATSGGARRPDQIRYLVEQGAIKPLCNLLACQDNKIIQVALDGIE 444
Query: 717 NMLKM 731
N+L++
Sbjct: 445 NILRV 449
Score = 91.9 bits (218), Expect = 9e-20
Identities = 53/209 (25%), Positives = 99/209 (47%)
Frame = +3
Query: 141 PALNVLILHNDSSVLVDTVWAISYLTDGGNEQIQMVIESGIVTTLIPLLSHKEVKVQTAA 320
P LN++ + S+L ++ W +S + G N Q S ++ L L+ + V A
Sbjct: 209 PLLNIIESNRRLSMLRNSTWTLSNMCRGKNPQPDWNSISQVIPVLSKLIYTLDEDVLVDA 268
Query: 321 LRAVGNIVTGTDEQTQVVLNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNKQQVQAV 500
L A+ + G +E+ Q +++ LL HP ++ A+ + NI G+ Q Q +
Sbjct: 269 LWAISYLSDGANEKIQAIIDAGIPRRLVELLMHPSAQVQTPALRSVGNIVTGDDVQTQVI 328
Query: 501 IDAGLLPMIVANLSKGEFQTQKEAAWAVSNLSISGTRDQVAALINCGVIPPFCNLLSCKD 680
I+ G L +++ LS +KEA W +SN++ +G Q+ +I +IPP +LL+ D
Sbjct: 329 INCGALSALLSLLSSPRDGVRKEACWTISNIT-AGNSSQIQYVIEANIIPPLIHLLTTAD 387
Query: 681 TQVINVVLDGLSNMLKMAGDNAEQVANMI 767
++ +SN +Q+ ++
Sbjct: 388 FKIQKEACWAISNATSGGARRPDQIRYLV 416
Score = 78.6 bits (185), Expect = 9e-16
Identities = 52/221 (23%), Positives = 105/221 (47%), Gaps = 3/221 (1%)
Frame = +3
Query: 96 SKDPPPPLKTIQE--ILPALNVLILHNDSSVLVDTVWAISYLTDGGNEQIQMVIESGIVT 269
SK+ PP++ + + ++P + H ++ + + WA++ + G + Q +V+E+ V
Sbjct: 107 SKETNPPIQKVIDAGVVPRFVEFLSHENNLLKFEASWALTNVASGSSNQTHVVVEANAVP 166
Query: 270 TLIPLLSHKEVKVQTAALRAVGNIVTGTDEQTQVVLNCDALSHFPALL-THPKEKICKEA 446
+ LLS E V+ A+ A+GNI + VL C L ++ ++ + + + +
Sbjct: 167 VFVSLLSSSEQDVREQAVWALGNIAGDSPMCRDHVLQCGVLEPLLNIIESNRRLSMLRNS 226
Query: 447 VWFLSNITAGNKQQVQAVIDAGLLPMIVANLSKGEFQTQKEAAWAVSNLSISGTRDQVAA 626
W LSN+ G Q + ++P++ + + +A WA+S LS G +++ A
Sbjct: 227 TWTLSNMCRGKNPQPDWNSISQVIPVLSKLIYTLDEDVLVDALWAISYLS-DGANEKIQA 285
Query: 627 LINCGVIPPFCNLLSCKDTQVINVVLDGLSNMLKMAGDNAE 749
+I+ G+ LL QV L + N+ + GD+ +
Sbjct: 286 IIDAGIPRRLVELLMHPSAQVQTPALRSVGNI--VTGDDVQ 324
Score = 70.1 bits (164), Expect = 3e-13
Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 1/177 (0%)
Frame = +3
Query: 228 NEQIQMVIESGIVTTLIPLLSHKEVKVQTAALRAVGNIVTGTDEQTQVVLNCDALSHFPA 407
N IQ VI++G+V + LSH+ ++ A A+ N+ +G+ QT VV+ +A+ F +
Sbjct: 111 NPPIQKVIDAGVVPRFVEFLSHENNLLKFEASWALTNVASGSSNQTHVVVEANAVPVFVS 170
Query: 408 LLTHPKEKICKEAVWFLSNITAGNKQQVQAVIDAGLL-PMIVANLSKGEFQTQKEAAWAV 584
LL+ ++ + ++AVW L NI + V+ G+L P++ S + + W +
Sbjct: 171 LLSSSEQDVREQAVWALGNIAGDSPMCRDHVLQCGVLEPLLNIIESNRRLSMLRNSTWTL 230
Query: 585 SNLSISGTRDQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNMLKMAGDNAEQV 755
SN+ G Q VIP L+ D V+ L +S + A + + +
Sbjct: 231 SNM-CRGKNPQPDWNSISQVIPVLSKLIYTLDEDVLVDALWAISYLSDGANEKIQAI 286
Score = 64.9 bits (151), Expect = 1e-11
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 3/142 (2%)
Frame = +3
Query: 351 TDEQTQVVLNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNKQQVQAVIDAGLLPMIV 530
T+ Q V++ + F L+H + EA W L+N+ +G+ Q V++A +P+ V
Sbjct: 110 TNPPIQKVIDAGVVPRFVEFLSHENNLLKFEASWALTNVASGSSNQTHVVVEANAVPVFV 169
Query: 531 ANLSKGEFQTQKEAAWAVSNLSISG--TRDQVAALINCGVIPPFCNLL-SCKDTQVINVV 701
+ LS E +++A WA+ N++ RD V + CGV+ P N++ S + ++
Sbjct: 170 SLLSSSEQDVREQAVWALGNIAGDSPMCRDHV---LQCGVLEPLLNIIESNRRLSMLRNS 226
Query: 702 LDGLSNMLKMAGDNAEQVANMI 767
LSNM + G N + N I
Sbjct: 227 TWTLSNMCR--GKNPQPDWNSI 246
Score = 50.8 bits (116), Expect = 2e-07
Identities = 35/130 (26%), Positives = 61/130 (46%)
Frame = +3
Query: 354 DEQTQVVLNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNKQQVQAVIDAGLLPMIVA 533
D++ + L AL + E + F ++ +Q VIDAG++P V
Sbjct: 69 DKENDLELELQLPDLLKALYSDDIEAQIQATAKFRKALSKETNPPIQKVIDAGVVPRFVE 128
Query: 534 NLSKGEFQTQKEAAWAVSNLSISGTRDQVAALINCGVIPPFCNLLSCKDTQVINVVLDGL 713
LS + EA+WA++N++ SG+ +Q ++ +P F +LLS + V + L
Sbjct: 129 FLSHENNLLKFEASWALTNVA-SGSSNQTHVVVEANAVPVFVSLLSSSEQDVREQAVWAL 187
Query: 714 SNMLKMAGDN 743
N +AGD+
Sbjct: 188 GN---IAGDS 194
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 254 bits (623), Expect = 8e-69
Identities = 119/246 (48%), Positives = 171/246 (69%), Gaps = 3/246 (1%)
Frame = +3
Query: 3 GVVKPLLSLIKSDIP-IPFLRNVTWVIVNLCRSKDPPPPLKTIQEILPALNVLILHNDSS 179
GV++PLL++++S + LRN TW + NLCR K+PPP TI +P L L+ D
Sbjct: 204 GVLQPLLNILQSSASDVSMLRNATWTLSNLCRGKNPPPNWSTISVAVPILAKLLYSEDVE 263
Query: 180 VLVDTVWAISYLTDGGNEQIQMVIESGIVTTLIPLLSHKEVKVQTAALRAVGNIVTGTDE 359
++VD WAISYL+DG NE+I +++ G L+ LLS V +QT ALR+VGNIVTGTD
Sbjct: 264 IIVDACWAISYLSDGPNEKIGAILDVGCAPRLVELLSSPSVNIQTPALRSVGNIVTGTDA 323
Query: 360 QTQVVLNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNKQQVQAVIDAGLLPMIVANL 539
QTQ++++C AL+ FP+LL+H KE I KEA W +SNITAGN QQ+QA+I++ L+P +V L
Sbjct: 324 QTQIIIDCGALNAFPSLLSHQKENIRKEACWTISNITAGNTQQIQAIIESNLIPPLVHLL 383
Query: 540 SKGEFQTQKEAAWAVSNLSIS--GTRDQVAALINCGVIPPFCNLLSCKDTQVINVVLDGL 713
S +++T+KEA WA+SN + G DQ+ L++ GVI P C++L+ D ++I V LD +
Sbjct: 384 SYADYKTKKEACWAISNATSGGLGQPDQIRYLVSQGVIKPLCDMLNGSDNKIIQVALDAI 443
Query: 714 SNMLKM 731
N+LK+
Sbjct: 444 ENILKV 449
Score = 85.8 bits (203), Expect = 6e-18
Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 1/210 (0%)
Frame = +3
Query: 141 PALNVLILH-NDSSVLVDTVWAISYLTDGGNEQIQMVIESGIVTTLIPLLSHKEVKVQTA 317
P LN+L +D S+L + W +S L G N S V L LL ++V++
Sbjct: 208 PLLNILQSSASDVSMLRNATWTLSNLCRGKNPPPNWSTISVAVPILAKLLYSEDVEIIVD 267
Query: 318 ALRAVGNIVTGTDEQTQVVLNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNKQQVQA 497
A A+ + G +E+ +L+ LL+ P I A+ + NI G Q Q
Sbjct: 268 ACWAISYLSDGPNEKIGAILDVGCAPRLVELLSSPSVNIQTPALRSVGNIVTGTDAQTQI 327
Query: 498 VIDAGLLPMIVANLSKGEFQTQKEAAWAVSNLSISGTRDQVAALINCGVIPPFCNLLSCK 677
+ID G L + LS + +KEA W +SN++ +G Q+ A+I +IPP +LLS
Sbjct: 328 IIDCGALNAFPSLLSHQKENIRKEACWTISNIT-AGNTQQIQAIIESNLIPPLVHLLSYA 386
Query: 678 DTQVINVVLDGLSNMLKMAGDNAEQVANMI 767
D + +SN +Q+ ++
Sbjct: 387 DYKTKKEACWAISNATSGGLGQPDQIRYLV 416
Score = 70.5 bits (165), Expect = 2e-13
Identities = 49/192 (25%), Positives = 91/192 (47%), Gaps = 3/192 (1%)
Frame = +3
Query: 126 IQEILPALNVLILHNDSSVLVDTVWAI-SYLTDGGNEQIQMVIESGIVTTLIPLLSHKEV 302
+++ P L ++ +D + + V YL+ + I VI G+V + L +
Sbjct: 75 MKDEFPKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIACGVVDRFVQFLESEHH 134
Query: 303 KVQTAALRAVGNIVTGTDEQTQVVLNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNK 482
+Q A A+ NI +GT +QT++V++ A+ F LL+ P++ + ++ VW L NI +
Sbjct: 135 LLQFEAAWALTNIASGTTDQTRIVVDSGAVPRFIQLLSSPEKDVREQVVWALGNIAGDSS 194
Query: 483 QQVQAVIDAGLL-PMI-VANLSKGEFQTQKEAAWAVSNLSISGTRDQVAALINCGVIPPF 656
V+ G+L P++ + S + + A W +SNL + I+ V P
Sbjct: 195 ACRDYVLGNGVLQPLLNILQSSASDVSMLRNATWTLSNLCRGKNPPPNWSTISVAV-PIL 253
Query: 657 CNLLSCKDTQVI 692
LL +D ++I
Sbjct: 254 AKLLYSEDVEII 265
Score = 49.6 bits (113), Expect = 5e-07
Identities = 30/86 (34%), Positives = 46/86 (53%)
Frame = +3
Query: 489 VQAVIDAGLLPMIVANLSKGEFQTQKEAAWAVSNLSISGTRDQVAALINCGVIPPFCNLL 668
+ VI G++ V L Q EAAWA++N++ SGT DQ +++ G +P F LL
Sbjct: 113 IDQVIACGVVDRFVQFLESEHHLLQFEAAWALTNIA-SGTTDQTRIVVDSGAVPRFIQLL 171
Query: 669 SCKDTQVINVVLDGLSNMLKMAGDNA 746
S + V V+ L N +AGD++
Sbjct: 172 SSPEKDVREQVVWALGN---IAGDSS 194
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 39.5 bits (88), Expect = 5e-04
Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 5/192 (2%)
Frame = +3
Query: 6 VVKPLLSLIKSDIPIPFLRNVTWVIVNLCRSKDPPPPLKTIQEILPALNVLILHNDSSVL 185
V +PL+ L+ SD T I NL P + L I DSS+
Sbjct: 427 VSEPLIKLL-SDPDTRVKSTATSAICNLVLKFSPLREKFLTTNFIDTLISNISTKDSSLR 485
Query: 186 VDTVWAISYLTDGGNEQIQMVIESGI-VTTLIPLLSHKEVKVQTAALRAVGNIVTGTDEQ 362
TVW + ++ G +E IQ+ I + L+ L + +++ VQ L+ + N +E
Sbjct: 486 KKTVWVLRHVVFGDDETIQLEPLKKIGASKLVELCNDEDLGVQEQMLQVLRNFTCQKEES 545
Query: 363 TQVVLNCDALSHFPALLTHPKEK----ICKEAVWFLSNITAGNKQQVQAVIDAGLLPMIV 530
+L + +L E + + +++ L +I A + + +++ L ++V
Sbjct: 546 VDFLLKMVPMELLAKILLEKLESKNPILIEPSIYILVHIAASDGELRDSILRQTKLLLLV 605
Query: 531 ANLSKGEFQTQK 566
+ E Q K
Sbjct: 606 KEIMLQEAQRLK 617
Score = 32.7 bits (71), Expect = 0.059
Identities = 17/81 (20%), Positives = 39/81 (48%)
Frame = +3
Query: 252 ESGIVTTLIPLLSHKEVKVQTAALRAVGNIVTGTDEQTQVVLNCDALSHFPALLTHPKEK 431
++ + LI LLS + +V++ A A+ N+V + L + + + ++
Sbjct: 424 DADVSEPLIKLLSDPDTRVKSTATSAICNLVLKFSPLREKFLTTNFIDTLISNISTKDSS 483
Query: 432 ICKEAVWFLSNITAGNKQQVQ 494
+ K+ VW L ++ G+ + +Q
Sbjct: 484 LRKKTVWVLRHVVFGDDETIQ 504
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 33.5 bits (73), Expect = 0.034
Identities = 27/132 (20%), Positives = 58/132 (43%)
Frame = +3
Query: 201 AISYLTDGGNEQIQMVIESGIVTTLIPLLSHKEVKVQTAALRAVGNIVTGTDEQTQVVLN 380
AIS + +G + ++ + S ++ ++PLL+ +V+ AA AVG + T QV
Sbjct: 394 AISSIAEGAEKLMKKEL-SRVLDMVLPLLADPHPRVRWAACNAVGQMSTDFAPDMQVKYP 452
Query: 381 CDALSHFPALLTHPKEKICKEAVWFLSNITAGNKQQVQAVIDAGLLPMIVANLSKGEFQT 560
L +L P+ ++ A + N + +V +L ++ L +
Sbjct: 453 SRILEALVPVLESPESRVQAHAAAAMVNFSEEADNKVLEPYLDDILQRLLTLLQSPKRYV 512
Query: 561 QKEAAWAVSNLS 596
Q++A ++ ++
Sbjct: 513 QEQAVTTIATVA 524
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 31.9 bits (69), Expect = 0.10
Identities = 27/124 (21%), Positives = 51/124 (41%)
Frame = +3
Query: 3 GVVKPLLSLIKSDIPIPFLRNVTWVIVNLCRSKDPPPPLKTIQEILPALNVLILHNDSSV 182
G ++PL+ L+ + + NL S + + L LIL SV
Sbjct: 333 GFLRPLVDLLSCTENEEIQCHAVSTLRNLAASSERNKRAIIEANAIQKLRCLILDAPVSV 392
Query: 183 LVDTVWAISYLTDGGNEQIQMVIESGIVTTLIPLLSHKEVKVQTAALRAVGNIVTGTDEQ 362
+ ++ L +E ++ GI LIPL ++VQ + A+GN+ + D+
Sbjct: 393 QSEMTACLAVLALS-DEFKSYLLNFGICNVLIPLTDSMSIEVQGNSAAALGNLSSNVDDY 451
Query: 363 TQVV 374
++ +
Sbjct: 452 SRFI 455
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 30.3 bits (65), Expect = 0.32
Identities = 21/88 (23%), Positives = 40/88 (45%)
Frame = +3
Query: 78 IVNLCRSKDPPPPLKTIQEILPALNVLILHNDSSVLVDTVWAISYLTDGGNEQIQMVIES 257
IV++ PP I+++LP L ++ + V +T+ + + D G+E +
Sbjct: 884 IVSVVGMSSMQPP---IRDLLPRLTPILRNRHEKVQENTIDLVGKIADRGSEYVSAREWM 940
Query: 258 GIVTTLIPLLSHKEVKVQTAALRAVGNI 341
I LI +L + ++ AA+ G I
Sbjct: 941 RICFELIDMLKAHKKSIRRAAVNTFGYI 968
Score = 25.4 bits (53), Expect = 9.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 615 QVAALINCGVIPPFCNLLSC 674
Q+A L+ C ++P NL+ C
Sbjct: 554 QIALLLGCSILPHLKNLVDC 573
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 28.7 bits (61), Expect = 0.97
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -2
Query: 488 LLFI-TCRDV*QKPYRLFAYLLFRMSQ*SREV*ESI-AVQDNLSLFVCSCDN 339
LLF+ +C DV KPY +F Y F + + R E+ +V + + +F C +N
Sbjct: 1061 LLFLKSCSDVDFKPYNVFIYTAFVVPRLDRFADENTQSVSNLMKIFRCWFEN 1112
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 342 VTGTDEQTQVVLNCDALSHFPALLTHPKEKICKEAVW 452
V G +++TQ CD + H A+ + IC E+VW
Sbjct: 687 VVGNEDRTQ----CDHVFHVNAIFKPSRCYICSESVW 719
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 6 VVKPLLSLIKSDIPIPFLRNVTWVIVNLCR 95
V++P SL++ D P+P VT I++ CR
Sbjct: 231 VIRPYTSLVEEDDPVPV---VTDTIISRCR 257
>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 377
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Frame = +2
Query: 197 LGH*LSNRWGQ*TNPNGDRIWYSNNLDSVVVA------QGSESTDGRP 322
LG NRWG P WY D+ +V + +S DG+P
Sbjct: 298 LGRINPNRWGSGEGPFDRHDWYVQRKDNSIVRYVIDYYEAPDSADGKP 345
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 25.8 bits (54), Expect = 6.8
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +3
Query: 114 PLKTIQEILPALNVLILHNDSSVLVDTVWAISYLTD---GGNEQIQMVIESGIVTTLIPL 284
PL + LP L+ L D+ + + WA S +++ E ++++G+V+ LI
Sbjct: 30 PLNNSEAALPLLSRL----DNPEIKERSWACSAISNIIASCTEGRLYLLKNGLVSKLIDR 85
Query: 285 LSHKEVKVQTAALRAVGNI 341
+S V+V A A+ N+
Sbjct: 86 ISDDSVEVVVEATGALRNL 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,370,080
Number of Sequences: 5004
Number of extensions: 73884
Number of successful extensions: 255
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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