Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0194
(768 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 355 1e-98
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 355 1e-98
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 355 1e-98
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 174 5e-44
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 174 5e-44
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 174 5e-44
Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical pr... 69 4e-12
Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical pr... 66 2e-11
AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alph... 66 2e-11
Z99277-3|CAB16486.1| 338|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical pr... 32 0.39
U53337-5|AAP40522.1| 377|Caenorhabditis elegans Hypothetical pr... 31 0.90
U53337-4|AAA96186.2| 636|Caenorhabditis elegans Hypothetical pr... 31 0.90
Z79759-6|CAB02135.3| 452|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z81044-2|CAB02813.1| 337|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z50044-8|CAA90360.1| 591|Caenorhabditis elegans Hypothetical pr... 30 2.1
AF014939-3|AAB63927.1| 831|Caenorhabditis elegans Hypothetical ... 30 2.1
AF003137-8|AAB93645.3| 494|Caenorhabditis elegans Hypothetical ... 30 2.1
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 29 4.8
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 29 4.8
AF016439-5|AAB65900.1| 630|Caenorhabditis elegans Hypothetical ... 29 4.8
AC006633-2|AAK68372.1| 321|Caenorhabditis elegans Hypothetical ... 28 6.4
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 355 bits (874), Expect = 1e-98
Identities = 166/255 (65%), Positives = 207/255 (81%)
Frame = +3
Query: 3 GVVKPLLSLIKSDIPIPFLRNVTWVIVNLCRSKDPPPPLKTIQEILPALNVLILHNDSSV 182
G+++PLL I +IPI FLRNVTWVIVNLCR KDP P ++ ILPAL++LI H D+++
Sbjct: 192 GILQPLLQFINPEIPIGFLRNVTWVIVNLCRCKDPAPSPAVVRTILPALSLLIHHQDTNI 251
Query: 183 LVDTVWAISYLTDGGNEQIQMVIESGIVTTLIPLLSHKEVKVQTAALRAVGNIVTGTDEQ 362
L+DTVWA+SYLTDGGNE IQMVIE+ +VT L+PLL H +VKVQTAALRAVGNIVTGTDEQ
Sbjct: 252 LIDTVWALSYLTDGGNEHIQMVIEAQVVTHLVPLLGHVDVKVQTAALRAVGNIVTGTDEQ 311
Query: 363 TQVVLNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNKQQVQAVIDAGLLPMIVANLS 542
TQ+VL+ L P LL H KEKI KEAVWF+SNITAGN+QQVQ V DAG++PMI+ L
Sbjct: 312 TQLVLDSGVLRFMPGLLAHYKEKINKEAVWFVSNITAGNQQQVQDVFDAGIMPMIIHLLD 371
Query: 543 KGEFQTQKEAAWAVSNLSISGTRDQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNM 722
+G+F TQKEAAWA+SN++ISG +QV ++ GV+ PFC +LSC D+Q+I VVLDG++N+
Sbjct: 372 RGDFPTQKEAAWAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVVLDGINNI 431
Query: 723 LKMAGDNAEQVANMI 767
LKMAG+ AEQV + I
Sbjct: 432 LKMAGEAAEQVTSEI 446
Score = 65.7 bits (153), Expect = 3e-11
Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 1/182 (0%)
Frame = +3
Query: 213 LTDGGNEQIQMVIESGIVTTLIPLLSHKEVKVQTAALRAVGNIVTGTDEQTQVVLNCDAL 392
L+ N I +I SGI+ L+ LS + +Q A A+ NI +GT EQTQ V+N A+
Sbjct: 93 LSTDRNPPIDDLIGSGILPVLVQCLSSTDPNLQFEAAWALTNIASGTSEQTQAVVNAGAV 152
Query: 393 SHFPALLTHPKEKICKEAVWFLSNITAGNKQQVQAVIDAGLL-PMIVANLSKGEFQTQKE 569
F LL+ +C+++VW L NI ++ G+L P++ + +
Sbjct: 153 PLFLQLLSCGNLNVCEQSVWALGNIIGDGPHFRDYCLELGILQPLLQFINPEIPIGFLRN 212
Query: 570 AAWAVSNLSISGTRDQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNMLKMAGDNAE 749
W + NL A++ ++P L+ +DT ++ + LS + ++ +
Sbjct: 213 VTWVIVNLCRCKDPAPSPAVVRT-ILPALSLLIHHQDTNILIDTVWALSYLTDGGNEHIQ 271
Query: 750 QV 755
V
Sbjct: 272 MV 273
Score = 57.6 bits (133), Expect = 9e-09
Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 5/225 (2%)
Frame = +3
Query: 96 SKDPPPPLKTI--QEILPALNVLILHNDSSVLVDTVWAISYLTDGGNEQIQMVIESGIVT 269
S D PP+ + ILP L + D ++ + WA++ + G +EQ Q V+ +G V
Sbjct: 94 STDRNPPIDDLIGSGILPVLVQCLSSTDPNLQFEAAWALTNIASGTSEQTQAVVNAGAVP 153
Query: 270 TLIPLLSHKEVKVQTAALRAVGNIVTGTDEQTQVVLNCDALSHFPAL-LTHPKEKI--CK 440
+ LLS + V ++ A+GNI+ L L P L +P+ I +
Sbjct: 154 LFLQLLSCGNLNVCEQSVWALGNIIGDGPHFRDYCLELGILQ--PLLQFINPEIPIGFLR 211
Query: 441 EAVWFLSNITAGNKQQVQAVIDAGLLPMIVANLSKGEFQTQKEAAWAVSNLSISGTRDQV 620
W + N+ + +LP + + + + WA+S L+ G + +
Sbjct: 212 NVTWVIVNLCRCKDPAPSPAVVRTILPALSLLIHHQDTNILIDTVWALSYLT-DGGNEHI 270
Query: 621 AALINCGVIPPFCNLLSCKDTQVINVVLDGLSNMLKMAGDNAEQV 755
+I V+ LL D +V L + N++ + + V
Sbjct: 271 QMVIEAQVVTHLVPLLGHVDVKVQTAALRAVGNIVTGTDEQTQLV 315
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 355 bits (874), Expect = 1e-98
Identities = 166/255 (65%), Positives = 207/255 (81%)
Frame = +3
Query: 3 GVVKPLLSLIKSDIPIPFLRNVTWVIVNLCRSKDPPPPLKTIQEILPALNVLILHNDSSV 182
G+++PLL I +IPI FLRNVTWVIVNLCR KDP P ++ ILPAL++LI H D+++
Sbjct: 192 GILQPLLQFINPEIPIGFLRNVTWVIVNLCRCKDPAPSPAVVRTILPALSLLIHHQDTNI 251
Query: 183 LVDTVWAISYLTDGGNEQIQMVIESGIVTTLIPLLSHKEVKVQTAALRAVGNIVTGTDEQ 362
L+DTVWA+SYLTDGGNE IQMVIE+ +VT L+PLL H +VKVQTAALRAVGNIVTGTDEQ
Sbjct: 252 LIDTVWALSYLTDGGNEHIQMVIEAQVVTHLVPLLGHVDVKVQTAALRAVGNIVTGTDEQ 311
Query: 363 TQVVLNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNKQQVQAVIDAGLLPMIVANLS 542
TQ+VL+ L P LL H KEKI KEAVWF+SNITAGN+QQVQ V DAG++PMI+ L
Sbjct: 312 TQLVLDSGVLRFMPGLLAHYKEKINKEAVWFVSNITAGNQQQVQDVFDAGIMPMIIHLLD 371
Query: 543 KGEFQTQKEAAWAVSNLSISGTRDQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNM 722
+G+F TQKEAAWA+SN++ISG +QV ++ GV+ PFC +LSC D+Q+I VVLDG++N+
Sbjct: 372 RGDFPTQKEAAWAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVVLDGINNI 431
Query: 723 LKMAGDNAEQVANMI 767
LKMAG+ AEQV + I
Sbjct: 432 LKMAGEAAEQVTSEI 446
Score = 65.7 bits (153), Expect = 3e-11
Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 1/182 (0%)
Frame = +3
Query: 213 LTDGGNEQIQMVIESGIVTTLIPLLSHKEVKVQTAALRAVGNIVTGTDEQTQVVLNCDAL 392
L+ N I +I SGI+ L+ LS + +Q A A+ NI +GT EQTQ V+N A+
Sbjct: 93 LSTDRNPPIDDLIGSGILPVLVQCLSSTDPNLQFEAAWALTNIASGTSEQTQAVVNAGAV 152
Query: 393 SHFPALLTHPKEKICKEAVWFLSNITAGNKQQVQAVIDAGLL-PMIVANLSKGEFQTQKE 569
F LL+ +C+++VW L NI ++ G+L P++ + +
Sbjct: 153 PLFLQLLSCGNLNVCEQSVWALGNIIGDGPHFRDYCLELGILQPLLQFINPEIPIGFLRN 212
Query: 570 AAWAVSNLSISGTRDQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNMLKMAGDNAE 749
W + NL A++ ++P L+ +DT ++ + LS + ++ +
Sbjct: 213 VTWVIVNLCRCKDPAPSPAVVRT-ILPALSLLIHHQDTNILIDTVWALSYLTDGGNEHIQ 271
Query: 750 QV 755
V
Sbjct: 272 MV 273
Score = 57.6 bits (133), Expect = 9e-09
Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 5/225 (2%)
Frame = +3
Query: 96 SKDPPPPLKTI--QEILPALNVLILHNDSSVLVDTVWAISYLTDGGNEQIQMVIESGIVT 269
S D PP+ + ILP L + D ++ + WA++ + G +EQ Q V+ +G V
Sbjct: 94 STDRNPPIDDLIGSGILPVLVQCLSSTDPNLQFEAAWALTNIASGTSEQTQAVVNAGAVP 153
Query: 270 TLIPLLSHKEVKVQTAALRAVGNIVTGTDEQTQVVLNCDALSHFPAL-LTHPKEKI--CK 440
+ LLS + V ++ A+GNI+ L L P L +P+ I +
Sbjct: 154 LFLQLLSCGNLNVCEQSVWALGNIIGDGPHFRDYCLELGILQ--PLLQFINPEIPIGFLR 211
Query: 441 EAVWFLSNITAGNKQQVQAVIDAGLLPMIVANLSKGEFQTQKEAAWAVSNLSISGTRDQV 620
W + N+ + +LP + + + + WA+S L+ G + +
Sbjct: 212 NVTWVIVNLCRCKDPAPSPAVVRTILPALSLLIHHQDTNILIDTVWALSYLT-DGGNEHI 270
Query: 621 AALINCGVIPPFCNLLSCKDTQVINVVLDGLSNMLKMAGDNAEQV 755
+I V+ LL D +V L + N++ + + V
Sbjct: 271 QMVIEAQVVTHLVPLLGHVDVKVQTAALRAVGNIVTGTDEQTQLV 315
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 355 bits (874), Expect = 1e-98
Identities = 166/255 (65%), Positives = 207/255 (81%)
Frame = +3
Query: 3 GVVKPLLSLIKSDIPIPFLRNVTWVIVNLCRSKDPPPPLKTIQEILPALNVLILHNDSSV 182
G+++PLL I +IPI FLRNVTWVIVNLCR KDP P ++ ILPAL++LI H D+++
Sbjct: 101 GILQPLLQFINPEIPIGFLRNVTWVIVNLCRCKDPAPSPAVVRTILPALSLLIHHQDTNI 160
Query: 183 LVDTVWAISYLTDGGNEQIQMVIESGIVTTLIPLLSHKEVKVQTAALRAVGNIVTGTDEQ 362
L+DTVWA+SYLTDGGNE IQMVIE+ +VT L+PLL H +VKVQTAALRAVGNIVTGTDEQ
Sbjct: 161 LIDTVWALSYLTDGGNEHIQMVIEAQVVTHLVPLLGHVDVKVQTAALRAVGNIVTGTDEQ 220
Query: 363 TQVVLNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNKQQVQAVIDAGLLPMIVANLS 542
TQ+VL+ L P LL H KEKI KEAVWF+SNITAGN+QQVQ V DAG++PMI+ L
Sbjct: 221 TQLVLDSGVLRFMPGLLAHYKEKINKEAVWFVSNITAGNQQQVQDVFDAGIMPMIIHLLD 280
Query: 543 KGEFQTQKEAAWAVSNLSISGTRDQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNM 722
+G+F TQKEAAWA+SN++ISG +QV ++ GV+ PFC +LSC D+Q+I VVLDG++N+
Sbjct: 281 RGDFPTQKEAAWAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVVLDGINNI 340
Query: 723 LKMAGDNAEQVANMI 767
LKMAG+ AEQV + I
Sbjct: 341 LKMAGEAAEQVTSEI 355
Score = 65.7 bits (153), Expect = 3e-11
Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 1/182 (0%)
Frame = +3
Query: 213 LTDGGNEQIQMVIESGIVTTLIPLLSHKEVKVQTAALRAVGNIVTGTDEQTQVVLNCDAL 392
L+ N I +I SGI+ L+ LS + +Q A A+ NI +GT EQTQ V+N A+
Sbjct: 2 LSTDRNPPIDDLIGSGILPVLVQCLSSTDPNLQFEAAWALTNIASGTSEQTQAVVNAGAV 61
Query: 393 SHFPALLTHPKEKICKEAVWFLSNITAGNKQQVQAVIDAGLL-PMIVANLSKGEFQTQKE 569
F LL+ +C+++VW L NI ++ G+L P++ + +
Sbjct: 62 PLFLQLLSCGNLNVCEQSVWALGNIIGDGPHFRDYCLELGILQPLLQFINPEIPIGFLRN 121
Query: 570 AAWAVSNLSISGTRDQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNMLKMAGDNAE 749
W + NL A++ ++P L+ +DT ++ + LS + ++ +
Sbjct: 122 VTWVIVNLCRCKDPAPSPAVVRT-ILPALSLLIHHQDTNILIDTVWALSYLTDGGNEHIQ 180
Query: 750 QV 755
V
Sbjct: 181 MV 182
Score = 57.6 bits (133), Expect = 9e-09
Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 5/225 (2%)
Frame = +3
Query: 96 SKDPPPPLKTI--QEILPALNVLILHNDSSVLVDTVWAISYLTDGGNEQIQMVIESGIVT 269
S D PP+ + ILP L + D ++ + WA++ + G +EQ Q V+ +G V
Sbjct: 3 STDRNPPIDDLIGSGILPVLVQCLSSTDPNLQFEAAWALTNIASGTSEQTQAVVNAGAVP 62
Query: 270 TLIPLLSHKEVKVQTAALRAVGNIVTGTDEQTQVVLNCDALSHFPAL-LTHPKEKI--CK 440
+ LLS + V ++ A+GNI+ L L P L +P+ I +
Sbjct: 63 LFLQLLSCGNLNVCEQSVWALGNIIGDGPHFRDYCLELGILQ--PLLQFINPEIPIGFLR 120
Query: 441 EAVWFLSNITAGNKQQVQAVIDAGLLPMIVANLSKGEFQTQKEAAWAVSNLSISGTRDQV 620
W + N+ + +LP + + + + WA+S L+ G + +
Sbjct: 121 NVTWVIVNLCRCKDPAPSPAVVRTILPALSLLIHHQDTNILIDTVWALSYLT-DGGNEHI 179
Query: 621 AALINCGVIPPFCNLLSCKDTQVINVVLDGLSNMLKMAGDNAEQV 755
+I V+ LL D +V L + N++ + + V
Sbjct: 180 QMVIEAQVVTHLVPLLGHVDVKVQTAALRAVGNIVTGTDEQTQLV 224
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 174 bits (424), Expect = 5e-44
Identities = 85/224 (37%), Positives = 131/224 (58%), Gaps = 1/224 (0%)
Frame = +3
Query: 57 LRNVTWVIVNLCRSKDPPPPLKTIQEILPALNVLILHNDSSVLVDTVWAISYLTDGGNEQ 236
+R + W N+CR K+P PL+ ++ + L L+ H D V D WA+SYLTDG +EQ
Sbjct: 236 VRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYLTDGPDEQ 295
Query: 237 IQMVIESGIVTTLIPLLSHKEVKVQTAALRAVGNIVTGTDEQTQVVLNCDALSHFPALLT 416
I++ ESG++ ++ E V ALR +GN+ TG D TQ V++ +L L+
Sbjct: 296 IELARESGVLPHVVAFFKEAENLV-APALRTLGNVATGNDSLTQAVIDLGSLDEILPLME 354
Query: 417 HPKEK-ICKEAVWFLSNITAGNKQQVQAVIDAGLLPMIVANLSKGEFQTQKEAAWAVSNL 593
+ I KE W +SNI AG ++Q+QAV+DA LLP+++ L G+ + Q EA+WA+SNL
Sbjct: 355 KTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLKSGDHKCQFEASWALSNL 414
Query: 594 SISGTRDQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNML 725
+ GT QV A++ V+P C L +T ++N L+ L ++
Sbjct: 415 AQGGTNRQVVAMLEDNVVPALCQALLQTNTDMLNNTLETLYTLM 458
Score = 67.7 bits (158), Expect = 9e-12
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 3/192 (1%)
Frame = +3
Query: 84 NLCRSKDPPPPLKTIQEILPALNVLILHNDSSVLVDTVWAISYLTDGGNEQIQMVIESGI 263
+L ++K+PP +L AL + + V + WA++ + G EQ +E+G+
Sbjct: 116 SLSKTKNPPIDEVIHCGLLQALVQALSVENERVQYEAAWALTNIVSGSTEQTIAAVEAGV 175
Query: 264 VTTLIPLLSHKEVKVQTAALRAVGNIVTGTDEQTQVVLNC---DALSHFPALLTHPKEKI 434
LI L H+ ++ AL AV NI + + V+ C +AL H + +
Sbjct: 176 TIPLIHLSVHQSAQISEQALWAVANIAGDSSQLRDYVIKCHGVEALMHLMEKVDQLGDSH 235
Query: 435 CKEAVWFLSNITAGNKQQVQAVIDAGLLPMIVANLSKGEFQTQKEAAWAVSNLSISGTRD 614
+ W SN+ + L +V + + Q +++A WAVS L+ G +
Sbjct: 236 VRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYLT-DGPDE 294
Query: 615 QVAALINCGVIP 650
Q+ GV+P
Sbjct: 295 QIELARESGVLP 306
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Frame = +3
Query: 372 VLNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNKQQVQAVIDAGL-LPMIVANLSKG 548
V++C L L+ E++ EA W L+NI +G+ +Q A ++AG+ +P+I ++ +
Sbjct: 128 VIHCGLLQALVQALSVENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQS 187
Query: 549 EFQTQKEAAWAVSNLSISGTRDQVA-ALINCGVIPPFCNLLSCKD 680
Q ++A WAV+N I+G Q+ +I C + +L+ D
Sbjct: 188 A-QISEQALWAVAN--IAGDSSQLRDYVIKCHGVEALMHLMEKVD 229
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 174 bits (424), Expect = 5e-44
Identities = 85/224 (37%), Positives = 131/224 (58%), Gaps = 1/224 (0%)
Frame = +3
Query: 57 LRNVTWVIVNLCRSKDPPPPLKTIQEILPALNVLILHNDSSVLVDTVWAISYLTDGGNEQ 236
+R + W N+CR K+P PL+ ++ + L L+ H D V D WA+SYLTDG +EQ
Sbjct: 236 VRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYLTDGPDEQ 295
Query: 237 IQMVIESGIVTTLIPLLSHKEVKVQTAALRAVGNIVTGTDEQTQVVLNCDALSHFPALLT 416
I++ ESG++ ++ E V ALR +GN+ TG D TQ V++ +L L+
Sbjct: 296 IELARESGVLPHVVAFFKEAENLV-APALRTLGNVATGNDSLTQAVIDLGSLDEILPLME 354
Query: 417 HPKEK-ICKEAVWFLSNITAGNKQQVQAVIDAGLLPMIVANLSKGEFQTQKEAAWAVSNL 593
+ I KE W +SNI AG ++Q+QAV+DA LLP+++ L G+ + Q EA+WA+SNL
Sbjct: 355 KTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLKSGDHKCQFEASWALSNL 414
Query: 594 SISGTRDQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNML 725
+ GT QV A++ V+P C L +T ++N L+ L ++
Sbjct: 415 AQGGTNRQVVAMLEDNVVPALCQALLQTNTDMLNNTLETLYTLM 458
Score = 67.7 bits (158), Expect = 9e-12
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 3/192 (1%)
Frame = +3
Query: 84 NLCRSKDPPPPLKTIQEILPALNVLILHNDSSVLVDTVWAISYLTDGGNEQIQMVIESGI 263
+L ++K+PP +L AL + + V + WA++ + G EQ +E+G+
Sbjct: 116 SLSKTKNPPIDEVIHCGLLQALVQALSVENERVQYEAAWALTNIVSGSTEQTIAAVEAGV 175
Query: 264 VTTLIPLLSHKEVKVQTAALRAVGNIVTGTDEQTQVVLNC---DALSHFPALLTHPKEKI 434
LI L H+ ++ AL AV NI + + V+ C +AL H + +
Sbjct: 176 TIPLIHLSVHQSAQISEQALWAVANIAGDSSQLRDYVIKCHGVEALMHLMEKVDQLGDSH 235
Query: 435 CKEAVWFLSNITAGNKQQVQAVIDAGLLPMIVANLSKGEFQTQKEAAWAVSNLSISGTRD 614
+ W SN+ + L +V + + Q +++A WAVS L+ G +
Sbjct: 236 VRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYLT-DGPDE 294
Query: 615 QVAALINCGVIP 650
Q+ GV+P
Sbjct: 295 QIELARESGVLP 306
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Frame = +3
Query: 372 VLNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNKQQVQAVIDAGL-LPMIVANLSKG 548
V++C L L+ E++ EA W L+NI +G+ +Q A ++AG+ +P+I ++ +
Sbjct: 128 VIHCGLLQALVQALSVENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQS 187
Query: 549 EFQTQKEAAWAVSNLSISGTRDQVA-ALINCGVIPPFCNLLSCKD 680
Q ++A WAV+N I+G Q+ +I C + +L+ D
Sbjct: 188 A-QISEQALWAVAN--IAGDSSQLRDYVIKCHGVEALMHLMEKVD 229
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 174 bits (424), Expect = 5e-44
Identities = 85/224 (37%), Positives = 131/224 (58%), Gaps = 1/224 (0%)
Frame = +3
Query: 57 LRNVTWVIVNLCRSKDPPPPLKTIQEILPALNVLILHNDSSVLVDTVWAISYLTDGGNEQ 236
+R + W N+CR K+P PL+ ++ + L L+ H D V D WA+SYLTDG +EQ
Sbjct: 236 VRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYLTDGPDEQ 295
Query: 237 IQMVIESGIVTTLIPLLSHKEVKVQTAALRAVGNIVTGTDEQTQVVLNCDALSHFPALLT 416
I++ ESG++ ++ E V ALR +GN+ TG D TQ V++ +L L+
Sbjct: 296 IELARESGVLPHVVAFFKEAENLV-APALRTLGNVATGNDSLTQAVIDLGSLDEILPLME 354
Query: 417 HPKEK-ICKEAVWFLSNITAGNKQQVQAVIDAGLLPMIVANLSKGEFQTQKEAAWAVSNL 593
+ I KE W +SNI AG ++Q+QAV+DA LLP+++ L G+ + Q EA+WA+SNL
Sbjct: 355 KTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLKSGDHKCQFEASWALSNL 414
Query: 594 SISGTRDQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNML 725
+ GT QV A++ V+P C L +T ++N L+ L ++
Sbjct: 415 AQGGTNRQVVAMLEDNVVPALCQALLQTNTDMLNNTLETLYTLM 458
Score = 67.7 bits (158), Expect = 9e-12
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 3/192 (1%)
Frame = +3
Query: 84 NLCRSKDPPPPLKTIQEILPALNVLILHNDSSVLVDTVWAISYLTDGGNEQIQMVIESGI 263
+L ++K+PP +L AL + + V + WA++ + G EQ +E+G+
Sbjct: 116 SLSKTKNPPIDEVIHCGLLQALVQALSVENERVQYEAAWALTNIVSGSTEQTIAAVEAGV 175
Query: 264 VTTLIPLLSHKEVKVQTAALRAVGNIVTGTDEQTQVVLNC---DALSHFPALLTHPKEKI 434
LI L H+ ++ AL AV NI + + V+ C +AL H + +
Sbjct: 176 TIPLIHLSVHQSAQISEQALWAVANIAGDSSQLRDYVIKCHGVEALMHLMEKVDQLGDSH 235
Query: 435 CKEAVWFLSNITAGNKQQVQAVIDAGLLPMIVANLSKGEFQTQKEAAWAVSNLSISGTRD 614
+ W SN+ + L +V + + Q +++A WAVS L+ G +
Sbjct: 236 VRTIAWAFSNMCRHKNPHAPLEVLRVLSKGLVKLVQHTDRQVRQDACWAVSYLT-DGPDE 294
Query: 615 QVAALINCGVIP 650
Q+ GV+P
Sbjct: 295 QIELARESGVLP 306
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Frame = +3
Query: 372 VLNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNKQQVQAVIDAGL-LPMIVANLSKG 548
V++C L L+ E++ EA W L+NI +G+ +Q A ++AG+ +P+I ++ +
Sbjct: 128 VIHCGLLQALVQALSVENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQS 187
Query: 549 EFQTQKEAAWAVSNLSISGTRDQVA-ALINCGVIPPFCNLLSCKD 680
Q ++A WAV+N I+G Q+ +I C + +L+ D
Sbjct: 188 A-QISEQALWAVAN--IAGDSSQLRDYVIKCHGVEALMHLMEKVD 229
>Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical
protein F53B2.5 protein.
Length = 447
Score = 68.9 bits (161), Expect = 4e-12
Identities = 48/220 (21%), Positives = 94/220 (42%), Gaps = 10/220 (4%)
Frame = +3
Query: 60 RNVTWVIVNLCRSKDPPPPLKTIQEILPALNVLILHNDSSVLVDT----VWAISYLTDGG 227
R + W + N+ P + ++ AL+ ++L D+ + +W ++ L D
Sbjct: 146 RQLIWCVNNIFSGGRTTMPSPVARSLICALSAILLDTDAVDNMGCGSMILWTLANLVDNS 205
Query: 228 NE--QIQMVIESGIVTTLI--PLLSHKEVKVQTAALRAVGNIVTGTDEQTQVVLNCDALS 395
+ +I M++ V I + + + LR +GNI G D QT ++++
Sbjct: 206 LDTTRIDMLLSQNYVVEHILEKFIDQTDKSCNVSCLRLIGNIAVGNDVQTDLLVDNPKFR 265
Query: 396 HFPALLTHPKEKICKEAVWFLSNITAGNKQQVQAVIDA--GLLPMIVANLSKGEFQTQKE 569
+ E EA W +SN+ AG + V ++D ++A + G+ + +KE
Sbjct: 266 VVMNIAMSSPEHH-SEAAWIISNVVAGAPRHVDYIMDDPDAFYEWVMAGIHTGDKRLRKE 324
Query: 570 AAWAVSNLSISGTRDQVAALINCGVIPPFCNLLSCKDTQV 689
W + NL + Q L++ G++ F LL D ++
Sbjct: 325 CLWIIGNLLATADEHQTYLLVSLGIVQHFPALLDFDDVRL 364
Score = 31.9 bits (69), Expect = 0.52
Identities = 18/89 (20%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = +3
Query: 189 DTVWAISYLTDGGNEQIQMVIES--GIVTTLIPLLSHKEVKVQTAALRAVGNIVTGTDE- 359
+ W IS + G + +++ ++ + + +++ L +GN++ DE
Sbjct: 280 EAAWIISNVVAGAPRHVDYIMDDPDAFYEWVMAGIHTGDKRLRKECLWIIGNLLATADEH 339
Query: 360 QTQVVLNCDALSHFPALLTHPKEKICKEA 446
QT ++++ + HFPALL ++ ++A
Sbjct: 340 QTYLLVSLGIVQHFPALLDFDDVRLNEKA 368
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +3
Query: 63 NVTWVIVNLCRSKDPPPPLKTIQEILPALNVLILHNDSSVLVDTVWAIS 209
N W+I N+C L L L L+ ++ + TVWAI+
Sbjct: 60 NAVWIITNMCCISQEVTHLFVNSNCLDILIKLVRSQNARLSSQTVWAIA 108
>Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical
protein T19B10.7 protein.
Length = 524
Score = 66.5 bits (155), Expect = 2e-11
Identities = 50/259 (19%), Positives = 116/259 (44%), Gaps = 8/259 (3%)
Frame = +3
Query: 6 VVKPLLSLIKSDIPIPFLRNVTWVIVNLCRSKDPPPPLKTIQEILPALNVL---ILHNDS 176
+V L+ ++ I R++ W++ C D P + EI P L ++ I D+
Sbjct: 197 IVSELIDASTINMSIILHRSLMWLVFLFCEKLDRCSP--HVDEIAPLLEIISNGIQSTDA 254
Query: 177 SVLVDTVWAISYLTDGGNEQIQMVIESGIVTTLIPLLSHKEVKVQTAALRAVGNIVTGTD 356
V D + + L + M + + + L+ L + + + + +I+ T
Sbjct: 255 MVQTDAASSCASLAEWPPIYHYMS-DLKLCSKLVANLRNDKGNARPKVKAGINSIIQATG 313
Query: 357 EQTQVVLNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNKQQVQAVIDAGLLPMIVAN 536
T+ +++ L + + +E + +SNI +Q + +I +G+L +
Sbjct: 314 YFTEEMIDAGLLEVLKGFVN--VSYMSQEVCFIISNICVEGEQTIDKLISSGVLREVARV 371
Query: 537 LSKGEFQTQKEAAWAVSNLSISGTRDQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLS 716
+ E+++++EAA+ + + S + + ++ G++ F +LL+C D +++ +LD +
Sbjct: 372 MEASEYRSRREAAFVICHCCASANQKHLEYVVELGMLSAFTDLLTCMDVSLVSYILDAIY 431
Query: 717 NML-----KMAGDNAEQVA 758
+L ++ DN+ VA
Sbjct: 432 LLLQFGEMRLLPDNSNPVA 450
>AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alpha 1
protein.
Length = 524
Score = 66.5 bits (155), Expect = 2e-11
Identities = 50/259 (19%), Positives = 116/259 (44%), Gaps = 8/259 (3%)
Frame = +3
Query: 6 VVKPLLSLIKSDIPIPFLRNVTWVIVNLCRSKDPPPPLKTIQEILPALNVL---ILHNDS 176
+V L+ ++ I R++ W++ C D P + EI P L ++ I D+
Sbjct: 197 IVSELIDASTINMSIILHRSLMWLVFLFCEKLDRCSP--HVDEIAPLLEIISNGIQSTDA 254
Query: 177 SVLVDTVWAISYLTDGGNEQIQMVIESGIVTTLIPLLSHKEVKVQTAALRAVGNIVTGTD 356
V D + + L + M + + + L+ L + + + + +I+ T
Sbjct: 255 MVQTDAASSCASLAEWPPIYHYMS-DLKLCSKLVANLRNDKGNARPKVKAGINSIIQATG 313
Query: 357 EQTQVVLNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNKQQVQAVIDAGLLPMIVAN 536
T+ +++ L + + +E + +SNI +Q + +I +G+L +
Sbjct: 314 YFTEEMIDAGLLEVLKGFVN--VSYMSQEVCFIISNICVEGEQTIDKLISSGVLREVARV 371
Query: 537 LSKGEFQTQKEAAWAVSNLSISGTRDQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLS 716
+ E+++++EAA+ + + S + + ++ G++ F +LL+C D +++ +LD +
Sbjct: 372 MEASEYRSRREAAFVICHCCASANQKHLEYVVELGMLSAFTDLLTCMDVSLVSYILDAIY 431
Query: 717 NML-----KMAGDNAEQVA 758
+L ++ DN+ VA
Sbjct: 432 LLLQFGEMRLLPDNSNPVA 450
>Z99277-3|CAB16486.1| 338|Caenorhabditis elegans Hypothetical
protein Y53C12A.4 protein.
Length = 338
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 483 QQVQAVIDAGLLPMIVANLSKGEFQTQKEAAWAVSNL 593
Q Q V +A +LPM++ +L K EF+ +K+ A +NL
Sbjct: 72 QLAQEVYNANVLPMLIKHLHKFEFECKKDVASVFNNL 108
>Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical
protein R10E11.5 protein.
Length = 444
Score = 32.3 bits (70), Expect = 0.39
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Frame = +3
Query: 519 PMIVANLSKG---EFQTQKEAAWAVSNLSISGTRDQ--VAALINCGVIPPFCNLLSCKDT 683
P I N K + +TQ+EA AV NLS + DQ V+ L+N + P + D
Sbjct: 208 PEIAGNSQKAVRIQSETQEEAPVAVKNLSANKMNDQIEVSQLMN-EITPESVPAVESLDN 266
Query: 684 QV-INVVLDGLSNMLKMAGDNAEQ 752
Q NVV D L+ + K+A D ++
Sbjct: 267 QKNANVVGDLLAKVQKVADDTIDK 290
>U53337-5|AAP40522.1| 377|Caenorhabditis elegans Hypothetical
protein R02E12.2b protein.
Length = 377
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 483 QQVQAVIDAGLLPMIVANLSKGEFQTQKEAAWAVSNL 593
Q Q V +A +LPM++ L K EF+ +K+ +NL
Sbjct: 82 QLAQEVYNANILPMLIKMLPKFEFECKKDVGQIFNNL 118
>U53337-4|AAA96186.2| 636|Caenorhabditis elegans Hypothetical
protein R02E12.2a protein.
Length = 636
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 483 QQVQAVIDAGLLPMIVANLSKGEFQTQKEAAWAVSNL 593
Q Q V +A +LPM++ L K EF+ +K+ +NL
Sbjct: 341 QLAQEVYNANILPMLIKMLPKFEFECKKDVGQIFNNL 377
>Z79759-6|CAB02135.3| 452|Caenorhabditis elegans Hypothetical
protein ZK858.7 protein.
Length = 452
Score = 30.7 bits (66), Expect = 1.2
Identities = 32/116 (27%), Positives = 51/116 (43%)
Frame = +3
Query: 420 PKEKICKEAVWFLSNITAGNKQQVQAVIDAGLLPMIVANLSKGEFQTQKEAAWAVSNLSI 599
PK+KI E + F+++ G + V + LPM V L + E Q Q EA+ A S++
Sbjct: 36 PKQKILIEKLKFVADSAFGKPHGLFEVSNNQCLPMSVDRLIE-ELQLQ-EASVATSSIDP 93
Query: 600 SGTRDQVAALINCGVIPPFCNLLSCKDTQVINVVLDGLSNMLKMAGDNAEQVANMI 767
T +L VI P L + + + +D + M K E VA ++
Sbjct: 94 EVTEPSEPSLDPRVVIAPSALKLEPEQKRQ-KLEMDAVLEMKKQGVSGQEMVAKLV 148
>Z81044-2|CAB02813.1| 337|Caenorhabditis elegans Hypothetical
protein C30H6.7 protein.
Length = 337
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +3
Query: 528 VANLSKGEFQTQKEAAWAVSNLSISGTRDQVAALINCGVIPPFCNLLSCKDTQVINVVLD 707
+A SK + Q + ++ +SNL + G+ A+IN PP C +L+ T+ V +D
Sbjct: 223 LARESKLKPQQFQGGSFTISNLGMFGSVTNFTAIIN----PPQCAILTIGGTRSEVVSVD 278
Query: 708 GLSNMLKMAGDN 743
G K+ G N
Sbjct: 279 GQLETQKLMGVN 290
>Z50044-8|CAA90360.1| 591|Caenorhabditis elegans Hypothetical
protein F22B5.9 protein.
Length = 591
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 231 EQIQMVIESGIVTTLIPLLSHKEVKVQTAALRA-VGNIVTGTDEQTQVVLN 380
EQ+++V E V L PLLS++E+ V T + +G + DE+ +LN
Sbjct: 286 EQVEVVYEETGVKELYPLLSYREMTVTTPEINTKIG--INLKDEEMATLLN 334
>AF014939-3|AAB63927.1| 831|Caenorhabditis elegans Hypothetical
protein ZC132.4 protein.
Length = 831
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +2
Query: 182 SC*YCLGH*LSNRWGQ*TNPNGDRIWYSNNLDSVVVAQGSESTDGRPKSSW*HCHRNRRT 361
SC YC LS+R G +P + NN ++ + E K +CHR
Sbjct: 759 SCAYCTRKHLSDRCGIIKDPKARKAHLENNNRCLLCLKKKEELHEFQKKRCHYCHRTNHH 818
Query: 362 NSSC 373
+S C
Sbjct: 819 SSWC 822
>AF003137-8|AAB93645.3| 494|Caenorhabditis elegans Hypothetical
protein C27A12.8 protein.
Length = 494
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Frame = +2
Query: 509 WSPAHDCGQP*QRRVSNPEG-----SCLGRF--QPQHQWHEGPSCCTYQLW 640
W P DCG+ RVS+ E SC RF H WHE +C +LW
Sbjct: 213 WCPGIDCGKA--VRVSHWEPRLVVCSCGSRFCFSCGHDWHEPVNCRLLKLW 261
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +2
Query: 485 TSSGCY*CWSPAHDCGQP*QRRVSNPEGSCLGRFQPQHQWHE 610
T S C+ C P H +R S+ +G C +H HE
Sbjct: 227 TGSACFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHE 268
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 667 SRLQNGGITPQLISAATWSLVPLMLRLET 581
S L+ + P I A +LVPL LRLET
Sbjct: 7 SHLRQADLPPHFIGANETNLVPLTLRLET 35
>AF016439-5|AAB65900.1| 630|Caenorhabditis elegans Hypothetical
protein R02F11.4 protein.
Length = 630
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = +3
Query: 465 ITAGNKQQVQAVIDA-GLLPMIVANLSKGEFQTQKEAAWA-VSNLSISGTRDQVAALINC 638
+T+G Q +A ++ G L + ANLS + A ++ V +L ISG Q I
Sbjct: 40 VTSGRIQNEKADVEVDGTLDL--ANLSLTNLEKSFAAEYSEVKHLKISGNCFQKFTYIK- 96
Query: 639 GVIPPFCNLLSCKDTQVINVVLDGLSNMLKM 731
+ P C ++ +D Q+ + D N+L++
Sbjct: 97 --LFPKCQIIDARDCQINKFIADFNYNLLEL 125
>AC006633-2|AAK68372.1| 321|Caenorhabditis elegans Hypothetical
protein F35B3.1 protein.
Length = 321
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 320 GGRLYFH-FLVRQQRNQGCYYTRFYHHLDLFIA 225
GG +YF F + + G Y R YHH ++F+A
Sbjct: 254 GGVIYFRTFNCFRDESSGHYMARVYHHGNVFLA 286
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,992,491
Number of Sequences: 27780
Number of extensions: 434285
Number of successful extensions: 1269
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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