Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0188
         (735 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    39   2e-04
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    35   0.003
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    32   0.016
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    31   0.037
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    27   0.45 
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            27   0.45 
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    27   0.60 
AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein p...    27   0.79 
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    26   1.1  
AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein p...    25   1.8  
AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        25   2.4  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 38.7 bits (86), Expect = 2e-04
 Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
 Frame = +3

Query: 36   IERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHNIKLA- 212
            IER R  +E+       N E     +  ++ +L Q    +L ++ +      N  I+   
Sbjct: 749  IERFRSPKERSLAQCKANLEAMTSTKEGLENELHQELMSQLSVQDQHEVDSLNDEIRRLN 808

Query: 213  -EVRSAATAKVE-EITKD-IENKLTTAELNREKEIQKKLDFVKKEERRAELVR-QNKSAR 380
             E + A T+++  E+TK+ +EN LT     R+ E+ + L  +  E+R+ +L   +N+   
Sbjct: 809  QENKEAFTSRMSLEVTKNKLENLLTNNLFRRKDELVQALQEISVEDRKRQLTNCRNEVVA 868

Query: 381  TE 386
            TE
Sbjct: 869  TE 870


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 34.7 bits (76), Expect = 0.003
 Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
 Frame = +3

Query: 9    KRDENLKKMIERLREHEEQVRKVRAG---NQEKFQQLESAIQE------KLQQAADRRLL 161
            K DE L++M  +L + ++ ++K++     N+++ QQL   + E       L++  +    
Sbjct: 734  KEDERLQEMTRKLHQRQQHMKKLQQELLTNEQQLQQLAGVVFEGETEETTLREELEHSRT 793

Query: 162  IEAEQREKLRNHNIKLAEVRSAATAKVEEITKDIENKLTTAELNREKEIQKKLDFVKKEE 341
            I A+ ++ +     KL +VR   T + EE T   +     A       IQ  +D  K+++
Sbjct: 794  ILAKLQKGIEEEQAKLDQVR--RTVQQEEQTAQAKKDAMGAVEAEIARIQASID--KEQQ 849

Query: 342  RRAELVRQNK 371
             R +L   +K
Sbjct: 850  ARHDLQTNHK 859


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 32.3 bits (70), Expect = 0.016
 Identities = 18/84 (21%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
 Frame = +3

Query: 120 IQEKLQQAADRRLLIEAEQ-REKLRNHNIKLAEVRSAATAKVEEITKDIENKLTTAELNR 296
           ++++L Q + ++   E E+  +K+      + E R   T    ++ KD++ K+   + +R
Sbjct: 727 LKQRLAQTSFQQTKEEIEELNKKIETLQKTIVEARETQTQCSAKV-KDLQAKIADGKGHR 785

Query: 297 EKEIQKKLDFVKKEERRAELVRQN 368
           E+E++   + +K+ ++++E  R+N
Sbjct: 786 ERELKSAEEDLKRSKKKSEESRKN 809



 Score = 30.7 bits (66), Expect = 0.049
 Identities = 25/117 (21%), Positives = 54/117 (46%)
 Frame = +3

Query: 36   IERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHNIKLAE 215
            ++R ++  E+ RK    +++ F+ L+  I+E LQ+     ++   EQ  KL      L +
Sbjct: 796  LKRSKKKSEESRKNWKKHEQDFETLKLEIEE-LQKG----IVTAKEQAVKLEEQIAALQQ 850

Query: 216  VRSAATAKVEEITKDIENKLTTAELNREKEIQKKLDFVKKEERRAELVRQNKSARTE 386
                 +   +E+T  +       + ++EK   +  +   K  +R +L++QN   + E
Sbjct: 851  RLVEVSGTTDEMTAAVTALKQQIKQHKEKMNSQSKELKAKYHQRDKLLKQNDELKLE 907


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 31.1 bits (67), Expect = 0.037
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
 Frame = +3

Query: 36   IERLREHEEQVRKVRAGNQEKFQQLESAIQ--EKLQQAADRRLLIEAEQREKLRNHNIKL 209
            + R     E+VR + A   E  Q  +S+    + +Q+  DR      EQ  ++ N  +K+
Sbjct: 842  VARTHSDPEKVRALEAKVAECKQAFDSSSTKADAMQKNVDRY----TEQINEITNSKVKV 897

Query: 210  AEVRSAATAK-VEEITKDIENKLTTAELNREKEIQKKLDFVKKEERRAE----LVRQNKS 374
             + +     K +++++ +I +KLT      E+ +QK  D +   E   E     +R+   
Sbjct: 898  LQTKINGLGKQIDKLSANI-SKLTVEIKTSERNVQKSKDKINSMEDEVEAAQSAIRKGND 956

Query: 375  ARTE 386
             RT+
Sbjct: 957  ERTQ 960



 Score = 23.4 bits (48), Expect = 7.4
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 3    ADKRDENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAAD 149
            A +   ++KK I  L++ E + +  R     +F+Q+   I+ KLQ+  D
Sbjct: 982  AHEGSSSIKKEIVALQKREAEGKMKRL----EFEQILQTIETKLQETKD 1026


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 27.5 bits (58), Expect = 0.45
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = +3

Query: 18  ENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNH 197
           E L+  I+RL E    +++  A   E+   +   +QE+ ++A  R   +EA+  +    H
Sbjct: 118 ELLRATIQRLEEQNCAMKEQNAKLLEQITGMCQLLQEEKEEAKRREEKLEAQMEKLAAAH 177

Query: 198 NIKLAEVRSAATAKV 242
                 + S   AKV
Sbjct: 178 QRDRDVLNSLLAAKV 192


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 27.5 bits (58), Expect = 0.45
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 483 AHQHQQSDLTR*HRCREKRHYVSIGRR*V*TERDASNVASKSFAEIKLL 629
           AHQ QQ    + H      H    G     +E+D+S  +SKS   +K+L
Sbjct: 148 AHQQQQQQQQQLHHHHHHHHNAPAGGESSTSEKDSSRESSKSPMLMKML 196


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
            gambiae RT2 retroposon. ).
          Length = 1222

 Score = 27.1 bits (57), Expect = 0.60
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
 Frame = +3

Query: 123  QEKLQQAADRRLLIEAEQREKLRNHNI--KLAEVRSAATAKVEEITKDIENKLTTAELNR 296
            QE L +     +  +  QR  LR+ +   ++ E     TA+++    +    L    + R
Sbjct: 1029 QELLGEGGPDPVCPDTLQRHLLRDADSWSRICEGAKRITAQLQRAWDEERAALAVNVIER 1088

Query: 297  EKEIQKKLDFVKKEERRAELVRQNKSARTET 389
            + E   +L+  + E RRA   R+N + R  T
Sbjct: 1089 QDEDAAELEAQRAEVRRARNERRNANRRAAT 1119


>AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein
           protein.
          Length = 429

 Score = 26.6 bits (56), Expect = 0.79
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 33  MIERLREHEEQVRKVRAGNQEKFQQLESA--IQEKLQQAADRRLLIEAEQREKLR 191
           M E +R+    + +  A N+   ++L     +  K Q+  +RR LI  E+ EK+R
Sbjct: 1   MREAIRQLTNSLAEANARNERINEELTQMRILMTKQQEYTERRELIAREEMEKMR 55


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 21/112 (18%), Positives = 46/112 (41%)
 Frame = +3

Query: 18  ENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNH 197
           E LK  I++L E   ++++      E+  ++   +QE+ ++A  R   ++A+  +    H
Sbjct: 94  ELLKATIQQLEEQNLEMKEQNFRLAEQITRMCQLLQEEKEEAKRREEKLKAQMEKLAAAH 153

Query: 198 NIKLAEVRSAATAKVEEITKDIENKLTTAELNREKEIQKKLDFVKKEERRAE 353
                 + S   AKV        ++     L R    Q +    +++  + E
Sbjct: 154 QRDRNLLNSLLAAKVAGGQPSASSRQPPTPLPRRSSAQPQQQQQQQQRNQQE 205


>AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein
           protein.
          Length = 455

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 18/85 (21%), Positives = 43/85 (50%)
 Frame = +3

Query: 18  ENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNH 197
           +NL++  ++    +EQ+ ++R   +EK ++     Q + ++A  R    +A+  EKLR  
Sbjct: 43  QNLEETRKKNESLQEQLTQLRWLMEEKLREQREDAQRREEEARRREEAAKAD-NEKLRVE 101

Query: 198 NIKLAEVRSAATAKVEEITKDIENK 272
             +      A +A++ ++ +  + K
Sbjct: 102 QQETHTTLIAISAQLRDLQQKNQMK 126


>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 204 KLAEVRSAATAKVEEITKDIENKLTTAELNREKEIQKKLDFVKKEE 341
           K AE      AKVEE  +         E+ R + IQK  D ++K++
Sbjct: 134 KEAERLRRDKAKVEEDQRHYRELKAADEIKRRELIQKAEDLIQKDK 179


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 542,128
Number of Sequences: 2352
Number of extensions: 8177
Number of successful extensions: 22
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 75260343
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)