Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0188
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.32 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   3.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   3.9  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   3.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 42   RLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQRE 182
            R+R  +EQ R      Q++ QQ +   Q++ QQ   ++   +A +RE
Sbjct: 1194 RIRGLQEQQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQARERE 1240


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/66 (18%), Positives = 28/66 (42%)
 Frame = +3

Query: 6   DKRDENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREK 185
           D+R E L    E+L E     ++     + +    ++  + +  +   +    + ++REK
Sbjct: 16  DRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRKEREK 75

Query: 186 LRNHNI 203
            + H I
Sbjct: 76  SKEHKI 81


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/66 (18%), Positives = 28/66 (42%)
 Frame = +3

Query: 6   DKRDENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREK 185
           D+R E L    E+L E     ++     + +    ++  + +  +   +    + ++REK
Sbjct: 16  DRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRKEREK 75

Query: 186 LRNHNI 203
            + H I
Sbjct: 76  SKEHKI 81


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/66 (18%), Positives = 28/66 (42%)
 Frame = +3

Query: 6   DKRDENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREK 185
           D+R E L    E+L E     ++     + +    ++  + +  +   +    + ++REK
Sbjct: 16  DRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRKEREK 75

Query: 186 LRNHNI 203
            + H I
Sbjct: 76  SKEHKI 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,522
Number of Sequences: 438
Number of extensions: 2432
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)