Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0187
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|c...    28   0.53 
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    24   6.5  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    24   8.6  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    24   8.6  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    24   8.6  

>SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 147

 Score = 27.9 bits (59), Expect = 0.53
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 109 HSFKKFHGELCNTKAPKSDILVNQLKYN*KQIFL 8
           H F  F   LC   A  +  + +Q K N +QIF+
Sbjct: 12  HRFHPFRPVLCEDSASAATTITSQFKLNYRQIFI 45


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 158 WKEIVLNTGGTHSTLQDIKLPQKAGGYWYKDST 256
           W+E     G T  +L  I+ P++  GY ++ ++
Sbjct: 856 WQEEKKRRGNTVDSLGPIRFPRRMSGYNFRSAS 888


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
 Frame = -1

Query: 121 ESDRHSFKKFHG---ELCNTKAP 62
           E++ H FKKF+G   EL N + P
Sbjct: 627 ENETHRFKKFYGKERELSNNEFP 649


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 98  LEAMPVTFKEIAPNHNIPEKWKEIV 172
           +E +P    ++  + NIPE+W   V
Sbjct: 61  MEKIPRVIHQLWKDENIPERWSNTV 85


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 71  CITKFTMEFLEAMPVTFKEIAPNHNIP 151
           C  +FT  FL+ +    KEI P  +IP
Sbjct: 55  CGGEFTDSFLQNISRLIKEIKPKDDIP 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,428,796
Number of Sequences: 5004
Number of extensions: 26834
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)