Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0187
         (370 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58950| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.22 
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)                       30   0.67 
SB_6969| Best HMM Match : Astacin (HMM E-Value=0)                      29   1.2  
SB_44622| Best HMM Match : dsrm (HMM E-Value=3.1e-16)                  28   2.7  
SB_39257| Best HMM Match : UPF0113 (HMM E-Value=7.3)                   27   4.8  
SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)                     27   6.3  
SB_11447| Best HMM Match : 5HT_transporter (HMM E-Value=6.9)           26   8.3  

>SB_58950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 31.5 bits (68), Expect = 0.22
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 221 QKAGGYWYKDSTK--FYTRNRFIYWQTTSDAIEI 316
           Q AGGY Y+ +T+    T NRFI W+   + +E+
Sbjct: 44  QVAGGYGYRRNTRPDSVTNNRFILWKINDNILEL 77


>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1858

 Score = 29.9 bits (64), Expect = 0.67
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 148  NIMIWSNLLESDRHSFKKFHGELCNTKAPKSDILVNQLK 32
            NI  W+NL   +    KK+HGE+ N +   S+ + N+L+
Sbjct: 1707 NIKYWTNLRSKEEALSKKWHGEIFNDQRKNSNEM-NKLR 1744


>SB_6969| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 225

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -1

Query: 142 MIWSNLLESDRHSFKKF-HGELCNTKAP 62
           ++WSN+ E ++H+F+K+ HG + +   P
Sbjct: 142 IVWSNIKEENKHNFEKYNHGVIDSLGVP 169


>SB_44622| Best HMM Match : dsrm (HMM E-Value=3.1e-16)
          Length = 724

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 98  LEAMPVTFKEIAPNHNIPEKWKEIVLNTGG 187
           LE++P +FK +  N+  P++W   V+N GG
Sbjct: 260 LESLPYSFKGVDVNNKQPKEW---VINPGG 286


>SB_39257| Best HMM Match : UPF0113 (HMM E-Value=7.3)
          Length = 348

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 119 FKEIAPNHNIPEKWKEIVLNTGGTHSTLQDIKLPQKAGGY 238
           FKE    H     ++ + + TG ++STL+    P   GG+
Sbjct: 102 FKETVVTHKSAGGYRSLPMGTGHSNSTLRSGAQPLDVGGF 141


>SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 137 NHNIPEKWKEIVLNTGG 187
           N  IP+KW+  V+N GG
Sbjct: 311 NEQIPDKWRTDVINNGG 327


>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
          Length = 2568

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 95  FLEAMPVTFKEIAPNHNIPEKWKEIVLN 178
           +   MP  F   AP  N P+ WK I++N
Sbjct: 656 YARIMPSDFAISAPMPNTPQIWKFIIIN 683


>SB_11447| Best HMM Match : 5HT_transporter (HMM E-Value=6.9)
          Length = 108

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +2

Query: 92  EFLEAMPVTFKEIAPNHNIPEKWKEIVLNTGGTHSTLQDIKLPQKAGGYWY 244
           E  E   + F    P  +I  +W+E+ L  G     +  +K+    G  WY
Sbjct: 25  EVEEGRGIAFYSSVPAMSIGSRWREVALLYGTCPCLVDWVKMEGGRGIIWY 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,144,224
Number of Sequences: 59808
Number of extensions: 186067
Number of successful extensions: 401
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)