Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0187
         (370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   0.87 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   3.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   3.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   4.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   4.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   4.6  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   6.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    20   8.1  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 0.87
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 294 VCQ*IKRFLV*NFVESLYQ*PPAFCGNLMSCKV 196
           +C      +V N +++LY+   +FCG L   KV
Sbjct: 503 ICSTATPMMVINMLQNLYEQFDSFCGQLDVYKV 535


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -2

Query: 219 GNLMSCKVL*VPPVLSTISFHFSGIL*FGAISLKVTGIASRNSM 88
           GN+ +C V+   P + T + ++   L    + L V G+ +  S+
Sbjct: 57  GNITTCTVIIKNPAMQTATNYYLFSLAISDLILLVLGLPNELSL 100


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 107 MPVTFKEIAPNHNIPEKWKEIVLNTGGT 190
           +P+TF+ +  N+ I  +    V+  G T
Sbjct: 367 LPITFRCLEENNKIDSRVTRFVVAVGAT 394


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +2

Query: 164 EIVLNTGGTHSTLQDIKLPQKAGGYW 241
           ++ +   G+   L   ++ QKA G+W
Sbjct: 54  KLAMKLFGSKKALMKERIRQKAAGHW 79


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +2

Query: 164 EIVLNTGGTHSTLQDIKLPQKAGGYW 241
           ++ +   G+   L   ++ QKA G+W
Sbjct: 54  KLAMKLFGSKKALMKERIRQKAAGHW 79


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +2

Query: 164 EIVLNTGGTHSTLQDIKLPQKAGGYW 241
           ++ +   G+   L   ++ QKA G+W
Sbjct: 54  KLAMKLFGSKKALMKERIRQKAAGHW 79


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 168 ISFHFSGIL*FGAISLKVTGIASRNSMVNFVIQ 70
           ++  FSGI+ FGA     T  +    +VN + Q
Sbjct: 410 VTLLFSGIVGFGAYCAAHTDSSGAMKIVNMLNQ 442


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 168 ISFHFSGIL*FGAISLKVTGIASRNSMVNFVIQ 70
           ++  FSGI+ FGA     T  +    +VN + Q
Sbjct: 410 VTLLFSGIVGFGAYCAAHTDSSGAVKIVNMLNQ 442


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,644
Number of Sequences: 438
Number of extensions: 1889
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)