Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0187
         (370 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58270.1 68418.m07295 mitochondrial half-ABC transporter (STA...    27   2.9  
At3g27970.1 68416.m03491 exonuclease family protein contains exo...    27   3.9  
At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s...    27   5.2  
At5g40310.1 68418.m04890 exonuclease family protein contains exo...    26   9.0  
At5g16910.1 68418.m01982 cellulose synthase family protein simil...    26   9.0  
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD...    26   9.0  

>At5g58270.1 68418.m07295 mitochondrial half-ABC transporter (STA1)
           identical to half-molecule ABC transporter ATM3
           GI:9964121 from [Arabidopsis thaliana]; almost identical
           to mitochondrial half-ABC transporter STA1 GI:9187883
           from [Arabidopsis thaliana]; identical to cDNA
           mitochondrial half-ABC transporter (STA1 gene)GI:9187882
          Length = 728

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 119 FKEIAPNHN-IPEKWKEIVLNTGGTHSTLQDIKLPQKAGGY-WYKDSTKFYTR 271
           F    PN +    K KEI   +  + S + D+K+ +   GY W +D+ +F  R
Sbjct: 90  FSTSTPNPDQTTTKTKEIKTTSSDSDSAMADMKILRTLAGYLWMRDNPEFRFR 142


>At3g27970.1 68416.m03491 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 354

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +1

Query: 40  DSLKYLTWGLLYYKVHHGIS*SY 108
           +SLKYLT   L Y VH GI   Y
Sbjct: 264 NSLKYLTQAYLGYDVHFGIQDPY 286


>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
           similar to SP|P04051 DNA-directed RNA polymerase III
           largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
           contains InterPro accession IPR000722: RNA polymerase,
           alpha subunit
          Length = 1328

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 74  ITKFTMEFLEAMPVTFKEIAPNHNIPEKWKEIVLNTGGTHSTLQDIKLP 220
           IT+  +  L A  +TF E    HNI EK ++ V N    +   ++++ P
Sbjct: 378 ITEVGIPILMAQILTFPECVSRHNI-EKLRQCVRNGPNKYPGARNVRYP 425


>At5g40310.1 68418.m04890 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 348

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 40  DSLKYLTWGLLYYKVHHGIS*SY 108
           +SLKYLT   L Y +H GI   Y
Sbjct: 258 NSLKYLTQAYLGYDIHVGIQDPY 280


>At5g16910.1 68418.m01982 cellulose synthase family protein similar
           to gi:2827143 cellulose synthase catalytic subunit,
           Arabidopsis thaliana, gi:9622886 cellulose synthase-7
           from Zea mays
          Length = 1145

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 239 WYKDSTKFYTRNRFIYWQTTSDAI 310
           WY+D T++ +R  +IY   T D +
Sbjct: 827 WYEDKTEWGSRIGWIYGSVTEDVV 850


>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
           similar to cellulose synthase catalytic subunit
           gi:2827143 from [Arabidopsis thaliana], cellulose
           synthase-7 (gi:9622886) from Zea mays; contains Pfam
           profile PF03552: Cellulose synthase
          Length = 1145

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 239 WYKDSTKFYTRNRFIYWQTTSDAI 310
           WY+D T++ +R  +IY   T D +
Sbjct: 827 WYEDKTEWGSRIGWIYGSVTEDVV 850


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,267,134
Number of Sequences: 28952
Number of extensions: 136548
Number of successful extensions: 304
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)