Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0186
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    39   6e-04
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    39   8e-04
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    38   0.001
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    34   0.018
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           33   0.041
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    32   0.095
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    32   0.095
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    31   0.13 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    31   0.22 
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    30   0.38 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.51 
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    29   0.89 
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.7  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    27   3.6  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    26   4.7  
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    26   6.3  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    25   8.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.3  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   8.3  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   8.3  

>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 591 DCPQVCALYAYGAAQPDELSLAEGDVVNVTRKTA-EGWYYG 710
           D   V ALYAY A    ELS+ EGD++ VT + A  GW  G
Sbjct: 585 DSSYVKALYAYTAQSDMELSIQEGDIIQVTNRNAGNGWSEG 625


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +3

Query: 603 VCALYAYGAAQPDELSLAEGDVVNVTRKTAEGWYYGE 713
           V ALY Y A  P+E+S  +GD + V R   +GW+ GE
Sbjct: 871 VIALYDYQAQIPEEISFQKGDTLMVLRTQEDGWWDGE 907


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +3

Query: 603 VCALYAYGAAQPDELSLAEGDVVNVTRKTAEGWYYG 710
           V ALY Y AA P+E+S  +GD + V +   +GW+ G
Sbjct: 612 VSALYDYDAAIPEEISFRKGDTIAVLKLYEDGWWEG 647


>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 603 VCALYAYGAAQPDELSLAEGDVVNVTRKTAEGWYYGER 716
           V A+Y++      EL L  GDV+ V+ +    WY GE+
Sbjct: 284 VKAIYSFTGRNEKELDLHTGDVIQVSEQLGPDWYMGEK 321


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 33.1 bits (72), Expect = 0.041
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 603 VCALYAYGAAQPDELSLAEGDVVNVTRKTAEGWYYG 710
           V ALYAY A  P E+ L   D + V  +  +GW+ G
Sbjct: 357 VRALYAYKATLPSEIDLNVDDTLVVLNRQKDGWWKG 392


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 31.9 bits (69), Expect = 0.095
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +3

Query: 615 YAYGAAQPDELSLAEGDVVNVTRKTAEGWYYGER 716
           Y++     +EL L +GD++ V ++  EGW+ GE+
Sbjct: 430 YSFEPETENELKLKKGDLLLVLKEIDEGWWVGEK 463


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 31.9 bits (69), Expect = 0.095
 Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 600 QVCALYAYGAAQPDELSLAEGDVVNVTRKTA--EGWYYG 710
           Q  A+Y++   QP +LS  +GD++++  ++   + W+ G
Sbjct: 375 QARAMYSFAGEQPGDLSFQKGDIIDIVERSGSHDDWWTG 413


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 600 QVCALYAYGAAQPDELSLAEGDVVNVTRKTAEGWYYG 710
           +V ALY + A +  ELS  +GD++ V     + W+ G
Sbjct: 219 RVRALYDFAATEQGELSFKKGDIILVLESVYKDWWKG 255


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = +3

Query: 609  ALYAYGAAQPDELSLAEGDVVNVTRKTAEGWY 704
            ALY +    P+E+++ + +++ + +K   GW+
Sbjct: 1113 ALYDFAGRSPNEMTIKKDEIIEIVQKEPSGWW 1144


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +3

Query: 612 LYAYGAAQPDELSLAEGDVVNVTRKTAEGWYYGERTR 722
           +Y Y   + +E+ L E + + +     +GW+ GE ++
Sbjct: 733 IYDYSPEEENEIELVENEQIQILEFVDDGWWLGENSK 769



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 582 AGWDCPQVCALYAYGAAQPDELSLAEGDVVNVTRKTAEGWYYGE 713
           AG     V A+Y Y A + +ELS  E +++         W+ GE
Sbjct: 798 AGGPGKSVKAIYDYQAQEDNELSFFEDEIIANVDCVDPNWWEGE 841


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 600 QVCALYAYGAAQPDELSLAEGDVVNVTRKTAEGWYYG 710
           +V ALY Y ++  D+L    G V++V       WY G
Sbjct: 7   RVVALYPYRSSFSDDLEFDPGQVIDVVSNLDGDWYTG 43


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 609 ALYAYGAAQPDELSLAEGDVVNVT-RKTAEGWY 704
           ALY Y A +  E+S A+GD  +V  R+  + WY
Sbjct: 31  ALYDYTARKATEVSFAKGDFFHVIGRENDKAWY 63


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 433 AATPSALHTSSSERGQWSTATYDSSPFFLVTTSRSLNRNTCRGT 302
           +ATPS   +SSS     S+++  SS     ++SRS +R T   T
Sbjct: 138 SATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSHRT 181


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -1

Query: 320 EHVQGNLVELLAEGQLQFVILPNQL 246
           +H++ N++E +A  QLQ ++L N++
Sbjct: 374 QHIEPNIIESIASYQLQHLLLFNEI 398


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 514 SLPHDINISTVLPSWLSRRV 455
           S PH  NI++VLP WL+  +
Sbjct: 99  SKPHVKNITSVLPKWLAEPI 118


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 486 VEMLMSCGSETEVSRWREALWLP 554
           V +  +CG ET V RW+    +P
Sbjct: 478 VRVFAACGRETRVGRWKTLRGIP 500


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +3

Query: 516 TEVSRWREALWLPAAAPGEAVYAGWDCPQVCALYAYGAAQPDELSLAEGDVVNVTRKTAE 695
           + V+   E L  P + PG    A  +  +V A+Y +      +L    G+V+ V      
Sbjct: 117 SSVNSSTEKLPPPPSYPGPNT-AHKNVERVLAMYDFPGPDAGDLGFHAGEVIIVLEHVNN 175

Query: 696 GWYYGE 713
            W+ GE
Sbjct: 176 DWWRGE 181


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
 Frame = -2

Query: 520 SVSLPHDINISTVLPSWLSRRVRSSACLV--AATPSALHTSSSERGQWSTATYDSSPFFL 347
           SVS       S+  P+  S    SS+ +V  +++PS+  +S+      ST++  S+    
Sbjct: 188 SVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSS 247

Query: 346 VTTSRSLNRNTCRGTLWNFLPKVSFSSSFFQTS 248
            +TS SL+ ++   T  +     S  SS   +S
Sbjct: 248 SSTSSSLSSSSSSSTASSSSSSSSIISSSSSSS 280


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 302 LVELLAEGQLQFVILPNQLRHLAGP 228
           L  +L+ G  Q VI+P+ +R ++GP
Sbjct: 526 LASILSPGDSQAVIVPHAIRIISGP 550


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 3   KNLSSEDEEYEACMHALATLNNYVQQCNEGARNTERVEEMY 125
           + L S     ++C   L  LNNY+  C       E +EE Y
Sbjct: 443 EELGSCPRSSDSCRAILDILNNYIFSCPLFLVTPEELEEQY 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,942
Number of Sequences: 5004
Number of extensions: 34247
Number of successful extensions: 144
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)