Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0186
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874... 33 0.17
04_04_0656 - 26988766-26988830,26989311-26989371,26989514-269895... 31 1.2
08_02_1034 + 23823194-23823307,23823399-23823620,23823984-238243... 30 1.6
05_07_0161 + 28089538-28089856,28089921-28090021 29 2.8
02_04_0314 - 21950400-21950639,21951384-21951680,21951791-219519... 29 3.7
07_01_0164 + 1154942-1155124,1155193-1155199,1155900-1157446 29 4.9
10_08_0475 + 18182412-18183270,18183384-18183880 28 6.5
06_03_0516 + 21661696-21662490 28 8.6
>03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,
8746665-8746893,8747314-8747420,8747560-8747622,
8747883-8747983,8748996-8749090,8749330-8749350,
8749987-8750082,8750188-8750308,8750415-8750570,
8750679-8750869,8751207-8751478,8751853-8751954,
8752006-8752038,8752132-8752308,8752397-8752466,
8752512-8752585,8752667-8752908,8752983-8753129,
8753526-8753751,8753893-8753970,8754378-8754521,
8754829-8755008,8755335-8755394,8755484-8755523,
8758653-8759137
Length = 1294
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 609 ALYAYGAAQPDELSLAEGDVVNVTRKTAEGWYYGERTR 722
ALY + A DELSL G+ V + + +GWYY ++ R
Sbjct: 1089 ALYDFTAGGDDELSLTAGEDVEIEYE-VDGWYYVKKKR 1125
>04_04_0656 -
26988766-26988830,26989311-26989371,26989514-26989588,
26989694-26989849,26989975-26990061,26990140-26990340,
26990942-26991043,26991223-26991374,26991488-26991557,
26991646-26991765,26992708-26992761
Length = 380
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 609 ALYAYGAAQPDELSLAEGDVVNVTRKTAEGWYYGE 713
AL ++ A EL+L+ GD+V V + + GW GE
Sbjct: 315 ALDSFKAESESELNLSAGDIVIVRKISTNGWAEGE 349
>08_02_1034 +
23823194-23823307,23823399-23823620,23823984-23824309,
23824648-23824777,23825145-23825441,23825550-23825815,
23827835-23828333,23828902-23828993,23829571-23829735,
23829817-23830204,23830275-23830393,23830494-23830524,
23830675-23830880,23830970-23831014,23831120-23831201,
23832210-23832398,23834499-23834602,23834669-23834759,
23835097-23835225,23835425-23835556,23835779-23835949,
23836143-23836171,23836214-23836301,23836313-23836391,
23836666-23836844
Length = 1390
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 485 GPSLVVVEEGEEQRVLGGGHSLRAAHLQQRARTVV 381
G +VV G E R +G GH LRA +LQ R V
Sbjct: 309 GRGVVVYLRGHEGRGIGLGHKLRAYNLQDDGRDTV 343
>05_07_0161 + 28089538-28089856,28089921-28090021
Length = 139
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 178 WGPPWRAGTDGRCGGWSGPAR*RSWFGRMT 267
W WR RCGGW G R S R T
Sbjct: 64 WRRRWRRSCWERCGGWKGEGRTNSVVWRAT 93
>02_04_0314 -
21950400-21950639,21951384-21951680,21951791-21951920,
21952377-21952699,21953385-21953606,21953693-21954089,
21954488-21954540
Length = 553
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 485 GPSLVVVEEGEEQRVLGGGHSLRAAHLQQRARTVV 381
G ++V G E R +G GH LRA +LQ R V
Sbjct: 420 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTV 454
>07_01_0164 + 1154942-1155124,1155193-1155199,1155900-1157446
Length = 578
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +1
Query: 127 DWRASSSSRPACATRPTWGPPW---RAGTDGRCG 219
+WR S A A+ P WG P+ RA RCG
Sbjct: 9 EWRCLPRSAAAAASLPLWGRPFVRARAARARRCG 42
>10_08_0475 + 18182412-18183270,18183384-18183880
Length = 451
Score = 28.3 bits (60), Expect = 6.5
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = -1
Query: 485 GPSLVVVEEGEEQRVLGGGHSLRA--AHLQQRARTVVHRHV-RLLAFLLGDDEQVVEQEH 315
GP +VVV+ R+ GH R AH Q + H +V ++A DE++V +H
Sbjct: 370 GPVVVVVK-----RLRNMGHVPRKDFAHTMQLLGKLRHENVVEVVACYFSKDEKLVVYDH 424
Query: 314 VQGNLVELLAEGQLQFVI 261
V G + L GQ ++
Sbjct: 425 VPGRSLFHLLHGQSMAIL 442
>06_03_0516 + 21661696-21662490
Length = 264
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = +1
Query: 130 WRASSSSRPACATRP-TWGPPWRAGTDGRCGGW 225
WR+ A P TW R G GRC GW
Sbjct: 175 WRSPPWRTTPTAPYPLTWWRTSRTGAGGRCSGW 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,437,048
Number of Sequences: 37544
Number of extensions: 298270
Number of successful extensions: 1461
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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