Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0185
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 38 0.002
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 38 0.002
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 34 0.019
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 33 0.057
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 32 0.076
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce... 30 0.30
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 29 0.93
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 28 1.6
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 28 1.6
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 6.6
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +2
Query: 578 PKS---VVCAFFKQGQCAKGDRCKFSHDLTI 661
PKS V C FF+QG C G C FSHDL +
Sbjct: 33 PKSLQHVPCKFFRQGTCTSGKNCIFSHDLEL 63
Score = 31.9 bits (69), Expect = 0.100
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 581 KSVVCAFFKQGQCAKGDRCKFSHDLTIERKAEKRS 685
+ +C +F++G C G +C H L RK + R+
Sbjct: 66 EKTICKYFQKGNCKFGSKCALEHVLPDGRKVKTRA 100
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 37.5 bits (83), Expect = 0.002
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 587 VVCAFFKQGQCAKGDRCKFSHDLTIER 667
V C FF+ G C G+ C FSH L ER
Sbjct: 45 VPCKFFRNGTCTAGENCPFSHSLETER 71
Score = 27.9 bits (59), Expect = 1.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 590 VCAFFKQGQCAKGDRCKFSHDL 655
+C +F +G C G +C SH L
Sbjct: 73 ICKYFLKGNCKFGPKCALSHAL 94
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 34.3 bits (75), Expect = 0.019
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 563 EKGTDPKSVVCAFFKQGQCAKGDRCKFSHDLTIER 667
+ G+ SVVC + +G C KG++C F H+ +++
Sbjct: 44 DSGSKMGSVVCKHWLRGLCKKGEQCDFLHEYNLKK 78
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 32.7 bits (71), Expect = 0.057
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 575 DPKSVVCAFFKQGQCAKGDRCKFSHDL 655
+P S C +F +G C++G +C++ H L
Sbjct: 111 NPGSFFCLYFARGMCSEGSKCEYLHRL 137
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 32.3 bits (70), Expect = 0.076
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 563 EKGTDPKSVVCAFFK-QGQCAKGDRCKFSHDLT 658
E G P +V C ++ G C KG C+F H+ T
Sbjct: 199 EVGNSPSAVYCRYYNANGICGKGAACRFVHEPT 231
Score = 28.7 bits (61), Expect = 0.93
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 581 KSVVCAFFKQGQCAKGDRCKFSHDLTIER 667
+ +C F G+C K + C SH+L R
Sbjct: 232 RKTICPKFLNGRCNKAEDCNLSHELDPRR 260
>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 292
Score = 30.3 bits (65), Expect = 0.30
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +1
Query: 298 MPPKKPS---GASXXXXXXXXXXVIEDKTFGLKNK-KGAKQQKFIQQVEKQVKSGG 453
MPPKK + G D TFGLKNK + K Q I+Q+E+ + G
Sbjct: 1 MPPKKAAKGKGDPGKAAKKDPTKKAADATFGLKNKNRSTKVQAKIRQIEQNAAASG 56
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 28.7 bits (61), Expect = 0.93
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 569 GTDPKSVVCAFF-KQGQCAKGDRCKFSH 649
GT+ V C+F+ K G C G+RC H
Sbjct: 10 GTEQDKVNCSFYYKIGACRHGERCSRKH 37
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 587 VVCAFFKQGQCAKGDRCKFSH 649
VVC +F Q +C G CK H
Sbjct: 2 VVCKYFLQNRCRYGTNCKNQH 22
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 581 KSVVCAFFKQGQCAKGDRCKFSHD 652
K +VC F + G+ + C FSHD
Sbjct: 9 KHIVCPFLRTGRKCQSRNCFFSHD 32
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = +2
Query: 590 VCAFFK-QGQCAKGDRCKFSH 649
VC +K G C GD CKF H
Sbjct: 189 VCKDYKLTGYCGYGDTCKFLH 209
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,312,527
Number of Sequences: 5004
Number of extensions: 37654
Number of successful extensions: 98
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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