Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0185
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein ... 73 3e-13
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 39 0.004
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 38 0.007
At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING ... 38 0.009
At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING ... 38 0.009
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ... 37 0.012
At2g02160.1 68415.m00152 zinc finger (CCCH-type) family protein ... 36 0.029
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin... 36 0.038
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 35 0.066
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 34 0.087
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family... 33 0.15
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 32 0.35
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 32 0.46
At5g07500.1 68418.m00858 zinc finger (CCCH-type) family protein ... 32 0.46
At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein ... 32 0.46
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 32 0.46
At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein ... 31 0.61
At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein ... 31 0.61
At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein ... 31 0.61
At1g32975.1 68414.m04061 hypothetical protein 31 0.61
At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein ... 31 0.81
At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein ... 31 0.81
At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein ... 31 1.1
At2g19810.1 68415.m02316 zinc finger (CCCH-type) family protein ... 31 1.1
At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein ... 30 1.4
At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ... 30 1.9
At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit... 30 1.9
At5g42820.1 68418.m05215 U2 snRNP auxiliary factor small subunit... 30 1.9
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 30 1.9
At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein ... 30 1.9
At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit... 30 1.9
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 29 2.5
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 29 2.5
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 29 2.5
At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ... 29 2.5
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 29 2.5
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ... 29 4.3
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 28 5.7
At3g44785.1 68416.m04822 U2AF splicing factor subunit, putative ... 28 5.7
At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identica... 28 5.7
At1g21570.1 68414.m02697 zinc finger (CCCH-type) family protein ... 28 5.7
At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein ... 28 5.7
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ... 28 7.6
At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein ... 28 7.6
At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein ... 28 7.6
At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein ... 28 7.6
At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein ... 28 7.6
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ... 28 7.6
At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein ... 28 7.6
At1g14530.2 68414.m01724 tobamovirus multiplication protein 3, p... 28 7.6
At1g14530.1 68414.m01723 tobamovirus multiplication protein 3, p... 28 7.6
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 27 10.0
At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein ... 27 10.0
At3g47930.1 68416.m05226 L-galactono-1,4-lactone dehydrogenase, ... 27 10.0
At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein ... 27 10.0
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ... 27 10.0
At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein ... 27 10.0
At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein ... 27 10.0
>At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 371
Score = 72.5 bits (170), Expect = 3e-13
Identities = 33/54 (61%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Frame = +2
Query: 533 LFKPVQTQ-KVEKGTDPKSVVCAFFKQGQCAKGDRCKFSHDLTIERKAEKRSLY 691
LFK +Q KV G DPKS++C FFK GQC KG +CKFSHDL I+RK EK +Y
Sbjct: 73 LFKVAISQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKGEKIDIY 126
Score = 35.9 bits (79), Expect = 0.029
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 298 MPPKKPSGASXXXXXXXXXXVIEDKTFGLKNKKGAKQ-QKFIQQVEKQVK 444
MPPK+ A +EDKTFGLKNK +K QK++Q +++ V+
Sbjct: 1 MPPKQQPKADLAKKQKQ----VEDKTFGLKNKNKSKNVQKYVQSLKQSVQ 46
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 38.7 bits (86), Expect = 0.004
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +2
Query: 590 VCAFFKQGQCAKGDRCKFSHD 652
VC F++G+C +GD CKFSHD
Sbjct: 135 VCRAFQRGECTRGDSCKFSHD 155
Score = 38.7 bits (86), Expect = 0.004
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +2
Query: 590 VCAFFKQGQCAKGDRCKFSHD 652
VC F++G+C +GD CKFSHD
Sbjct: 185 VCRAFQRGECTRGDSCKFSHD 205
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 37.9 bits (84), Expect = 0.007
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 578 PKSVVCAFFKQGQCAKGDRCKFSH 649
PK VC F+K G C KG++C+F H
Sbjct: 146 PKKSVCNFWKDGNCKKGEKCQFLH 169
>At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 37.5 bits (83), Expect = 0.009
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 587 VVCAFFKQGQCAKGDRCKFSHD 652
++C FF G C KG+ C+FSHD
Sbjct: 5 ILCKFFVHGSCLKGENCEFSHD 26
Score = 31.5 bits (68), Expect = 0.61
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 575 DPKSVVCAFFKQGQCAKGDRCKFSH 649
DP + VC F+++ C G RC++ H
Sbjct: 29 DPPNNVCTFYQKRICLYGSRCRYDH 53
>At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 37.5 bits (83), Expect = 0.009
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 587 VVCAFFKQGQCAKGDRCKFSHD 652
++C FF G C KG+ C+FSHD
Sbjct: 5 ILCKFFVHGSCLKGENCEFSHD 26
Score = 31.5 bits (68), Expect = 0.61
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 575 DPKSVVCAFFKQGQCAKGDRCKFSH 649
DP + VC F+++ C G RC++ H
Sbjct: 29 DPPNNVCTFYQKRICLYGSRCRYDH 53
>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 675
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 578 PKSV-VCAFFKQGQCAKGDRCKFSHDLTIERK 670
PK + C + +G+C +GD+CKFSHD E K
Sbjct: 350 PKPIKYCRHYLKGRCHEGDKCKFSHDTIPETK 381
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 575 DPKSVVCAFFKQGQCAKGDRCKFSHDLT 658
+ K C +F C KGD C F HDL+
Sbjct: 379 ETKCSPCCYFATQSCMKGDDCPFDHDLS 406
>At2g02160.1 68415.m00152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 669
Score = 35.9 bits (79), Expect = 0.029
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 527 AALFKPVQTQKVEKGTDPKSVVCAFFKQGQCAKGDRCKFSH 649
A +P+ + V C FF++G C KGD C F H
Sbjct: 98 AVSVQPIHATAQHPSVAKQPVPCLFFQKGMCMKGDMCSFLH 138
>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
(CCCH type) family protein
Length = 248
Score = 35.5 bits (78), Expect = 0.038
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 557 KVEKGTDPKSVVCAFFKQGQCAKGDRCKFSHDLTIERKA 673
K G++ K+ +C F +G C GDRC F+H RK+
Sbjct: 207 KPHPGSNFKTKICERFSKGNCTFGDRCHFAHGEAELRKS 245
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 34.7 bits (76), Expect = 0.066
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 590 VCAFFKQGQCAKGDRCKFSHDL 655
+C+FF +G+C +GD C + H++
Sbjct: 162 ICSFFIRGECTRGDECPYRHEM 183
>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
(CCCH type) family protein contains Pfam domains
PF00013: KH domain and PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 240
Score = 34.3 bits (75), Expect = 0.087
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 557 KVEKGTDPKSVVCAFFKQGQCAKGDRCKFSH 649
K G++ K+ +C + +G C GDRC F+H
Sbjct: 199 KPHPGSNYKTKICDRYSKGNCTYGDRCHFAH 229
>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
protein similar to SP|Q28141 ATP-dependent RNA helicase
A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
taurus}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1015
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 560 VEKGTDPKSVVCAFFKQGQCAKGDRCKFSHDLTIERKAEK 679
VE G P VC +F G C +G +C F+H L R A K
Sbjct: 725 VEYGEAP---VCVYFLNGYCNRGGQCTFTHTLQSTRPACK 761
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 548 QTQKVEKGTDPKSVVCAFFKQGQCAKGDRCKFSHDL 655
+T EK PK +C+F+ GQC +G C F H++
Sbjct: 148 RTPSYEKNR-PK--ICSFYTIGQCKRGAECSFRHEM 180
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 31.9 bits (69), Expect = 0.46
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +2
Query: 590 VCAFFKQGQCAKGDRCKFSH 649
VC ++K G+C +G++C+F H
Sbjct: 94 VCKYWKDGKCKRGEQCQFLH 113
>At5g07500.1 68418.m00858 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 245
Score = 31.9 bits (69), Expect = 0.46
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 584 SVVCAFFKQGQCAKGDRCKFSH 649
+V C F+ G C +GD C+F+H
Sbjct: 95 AVACPAFRNGACHRGDSCEFAH 116
>At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 315
Score = 31.9 bits (69), Expect = 0.46
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 593 CAFFKQGQCAKGDRCKFSH 649
C F++G C +GD C+FSH
Sbjct: 136 CPEFRKGSCRRGDSCEFSH 154
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 31.9 bits (69), Expect = 0.46
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 590 VCAFFKQGQCAKGDRCKFSHDL 655
VC+FF +G+C +G C + H++
Sbjct: 162 VCSFFIRGECTRGAECPYRHEM 183
>At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 607
Score = 31.5 bits (68), Expect = 0.61
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 587 VVCAFFKQGQCAKGDRCKFSHDL 655
V C F++G C++GD C+++H +
Sbjct: 253 VPCPEFRKGSCSRGDTCEYAHGI 275
>At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 580
Score = 31.5 bits (68), Expect = 0.61
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 587 VVCAFFKQGQCAKGDRCKFSH 649
V C F++G C KGD C+++H
Sbjct: 255 VPCPEFRKGSCPKGDSCEYAH 275
>At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 597
Score = 31.5 bits (68), Expect = 0.61
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 587 VVCAFFKQGQCAKGDRCKFSH 649
V C F++G C KGD C+++H
Sbjct: 258 VPCPEFRKGSCPKGDSCEYAH 278
>At1g32975.1 68414.m04061 hypothetical protein
Length = 120
Score = 31.5 bits (68), Expect = 0.61
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 608 QGQCAKGDRCKFSHDLTIERKAE 676
+G C KGD C F+H T+ R+ E
Sbjct: 40 RGVCLKGDSCDFNHSYTLPRREE 62
>At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 706
Score = 31.1 bits (67), Expect = 0.81
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 587 VVCAFFKQGQCAKGDRCKFSH 649
V C FK+G C +GD C+++H
Sbjct: 301 VPCPDFKKGSCKQGDMCEYAH 321
>At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 356
Score = 31.1 bits (67), Expect = 0.81
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 593 CAFFKQGQCAKGDRCKFSH 649
C F++G C KGD C+F+H
Sbjct: 125 CPDFRKGGCKKGDSCEFAH 143
>At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 386
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +2
Query: 560 VEKGTDP---KSVVCAFFKQGQCAKGDRCKFSHDL 655
V KGT K+ +CA F+ G C G+ C F+H +
Sbjct: 96 VNKGTANIFYKTRMCAKFRAGTCRNGELCNFAHGI 130
>At2g19810.1 68415.m02316 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 359
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 593 CAFFKQGQCAKGDRCKFSH 649
C F++G C +GD C+FSH
Sbjct: 124 CPEFRKGCCKRGDACEFSH 142
>At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 453
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 593 CAFF-KQGQCAKGDRCKFSHDLT 658
C FF + GQC G+ C+++H LT
Sbjct: 50 CQFFLRTGQCGYGNSCRYNHPLT 72
Score = 27.5 bits (58), Expect = 10.0
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +2
Query: 593 CAFFKQ-GQCAKGDRCKFSH 649
C FF G C GD CK+SH
Sbjct: 267 CRFFMNTGTCKYGDDCKYSH 286
>At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 554 QKVEKGTDPKSVVCAF-FKQGQCAKGDRCKFSH 649
++ E +PK + C + F+ G C G+ C+FSH
Sbjct: 141 ERDEDVENPKLMECKYYFRTGGCKYGESCRFSH 173
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 578 PKSVVCAFF-KQGQCAKGDRCKFSH 649
P S C+F+ + G C G CKF+H
Sbjct: 102 PDSEDCSFYMRTGSCKYGSSCKFNH 126
>At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit,
putative strong similarity to U2 snRNP auxiliary factor,
small subunit [Oryza sativa] GI:3850816
Length = 283
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 569 GTDPKSVVCAF-FKQGQCAKGDRCKFSHD 652
GT+ V C F FK G C GDRC H+
Sbjct: 10 GTEKDRVNCPFYFKIGACRHGDRCSRLHN 38
>At5g42820.1 68418.m05215 U2 snRNP auxiliary factor small subunit,
putative strong similarity to U2 snRNP auxiliary factor,
small subunit [Oryza sativa] GI:3850816
Length = 283
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 569 GTDPKSVVCAF-FKQGQCAKGDRCKFSHD 652
GT+ V C F FK G C GDRC H+
Sbjct: 10 GTEKDRVNCPFYFKIGACRHGDRCSRLHN 38
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 593 CAFFKQGQCAKGDRCKFSH 649
C +F +G C G+ CKF H
Sbjct: 135 CVYFSRGLCKNGESCKFIH 153
>At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 716
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 587 VVCAFFKQGQCAKGDRCKFSH 649
V C F++G C +GD C+++H
Sbjct: 305 VPCPDFRKGACRRGDMCEYAH 325
>At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit,
putative Strong similarity to gb|Y18349 U2 snRNP
auxiliary factor, small subunit from Oryza sativa. ESTs
gb|AA586295 and gb|AA597332 come from this gene
Length = 296
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 569 GTDPKSVVCAF-FKQGQCAKGDRCKFSHD 652
GT+ V C F FK G C GDRC H+
Sbjct: 10 GTEKDRVNCPFYFKIGACRHGDRCSRLHN 38
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 590 VCAFFKQGQCAKGDRCKFSH 649
VC F+ G C GD+C++ H
Sbjct: 114 VCNFWVDGNCTYGDKCRYLH 133
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 557 KVEKGTDPKSVVCAFFKQ-GQCAKGDRCKFSHD 652
+V D + +C +K+ G C GD CKF HD
Sbjct: 229 RVSARFDYQPDICKDYKETGYCGYGDSCKFLHD 261
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 557 KVEKGTDPKSVVCAFFKQ-GQCAKGDRCKFSHD 652
+V D + +C +K+ G C GD CKF HD
Sbjct: 229 RVSARFDYQPDICKDYKETGYCGYGDSCKFLHD 261
>At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein /
YT521-B-like family protein low similarity to cleavage
and polyadenylation specificity factor 30 kDa subunit
[Bos taurus] GI:2327052; contains Pfam profiles PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar),
PF04146: YT521-B-like family; supporting cDNA
gi|24415581|gb|AY140901.1|
Length = 678
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 566 KGTDPKSVVCAFFKQGQCAKGDRCKFSH 649
+G + VC + +G C KGD C F H
Sbjct: 57 RGRSFRQTVCRHWLRGLCMKGDACGFLH 84
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 557 KVEKGTDPKSVVCAFFKQ-GQCAKGDRCKFSHD 652
+V D + +C +K+ G C GD CKF HD
Sbjct: 194 RVSARFDYQPDICKDYKETGYCGYGDSCKFLHD 226
>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1230
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 578 PKSV-VCAFFKQGQCAKGDRCKFSH 649
PK + +C F++ G C +G C F H
Sbjct: 1205 PKGLKICKFYESGYCKRGASCSFWH 1229
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 28.3 bits (60), Expect = 5.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 590 VCAFFKQGQCAKGDRCKFSH 649
+C F+ G C GD+C++ H
Sbjct: 107 LCKFWVDGNCPYGDKCRYLH 126
>At3g44785.1 68416.m04822 U2AF splicing factor subunit, putative /
U2 auxiliary factor 38 kDa subunit, putative contains
Pfam profile PF00642 (View Sanger Pfam): Zinc finger
C-x8-C-x5-C-x3-H type (and similar); similar to
SP:Q94535 Splicing factor U2af 38 kDa subunit (U2
auxiliary factor 38 kDa subunit) Drosophila melanogaster
Length = 75
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +2
Query: 569 GTDPKSVVCAF-FKQGQCAKGDRC 637
GT+ V C F FK G C GDRC
Sbjct: 10 GTEKDRVNCPFYFKIGVCRNGDRC 33
>At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identical
to floral homeotic protein HUA1 [Arabidopsis thaliana]
gi|16797661|gb|AAK01470
Length = 524
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 578 PKSVVCAFF-KQGQCAKGDRCKFSHDLTIERKAEKRSL 688
P +C F+ K G+C G CKF H I+ + + +
Sbjct: 269 PSEPMCTFYMKTGKCKFGLSCKFHHPKDIQLPSSSQDI 306
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 599 FFKQGQCAKGDRCKFSH 649
+ K G+C G+RCKF H
Sbjct: 429 YMKTGECKFGERCKFHH 445
>At1g21570.1 68414.m02697 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 470
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 575 DPKSVVCAFFKQGQCAKGDRCKFSH 649
+P + +C F +G C++GD C+ H
Sbjct: 322 NPIAPICDGFLKGYCSEGDECRKKH 346
>At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 393
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/21 (47%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +2
Query: 590 VCAFFKQG-QCAKGDRCKFSH 649
VC F++G C++GD C+F+H
Sbjct: 127 VCPEFRRGGDCSRGDDCEFAH 147
>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 381
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +2
Query: 590 VCA-FFKQGQCAKGDRCKFSH 649
VC F + G C++GD C F+H
Sbjct: 105 VCPEFSRHGDCSRGDECGFAH 125
>At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 456
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +2
Query: 578 PKSVVCAFFKQ-GQCAKGDRCKFSHDL 655
P +V C F Q G C G CKF H L
Sbjct: 337 PGAVPCTHFAQHGICKFGPACKFDHSL 363
>At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 354
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 578 PKSVVCAFFKQ-GQCAKGDRCKFSHDLT 658
P C++F + GQC G CKF+H T
Sbjct: 113 PNEDDCSYFLRIGQCKFGGTCKFNHPQT 140
>At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 368
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 578 PKSVVCAFFKQ-GQCAKGDRCKFSHDLT 658
P C++F + GQC G CKF+H T
Sbjct: 134 PNEDDCSYFLRIGQCKFGGTCKFNHPQT 161
>At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 375
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 578 PKSVVCAFFKQ-GQCAKGDRCKFSHDLT 658
P C++F + GQC G CKF+H T
Sbjct: 134 PNEDDCSYFLRIGQCKFGGTCKFNHPQT 161
>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 587
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 593 CAFFKQGQCAKGDRCKFSH 649
C FF +G C G CKF H
Sbjct: 102 CKFFAKGWCFNGVSCKFLH 120
>At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 809
Score = 27.9 bits (59), Expect = 7.6
Identities = 8/24 (33%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +2
Query: 581 KSVVCAFFK-QGQCAKGDRCKFSH 649
K+ +C++F+ + C+ G+ CK++H
Sbjct: 81 KTSLCSYFRREASCSHGNECKYAH 104
>At1g14530.2 68414.m01724 tobamovirus multiplication protein 3,
putative / TOM3, putative (THH1) identical to THH1
(GI:15706301) [Arabidopsis thaliana]; supporting cDNA
gi|15706300|dbj|AB057678.1|
Length = 293
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = -3
Query: 461 GCTPPLFTCFSTC*MNFCCLAPFLFFKPNVLSSITFSFFFCSVFLLAPLGFL 306
G P FT + + L L++KP L I FF V L A LGFL
Sbjct: 142 GLRPSFFTINAVVYVIQIALWLVLWWKPVHLMVIISKMFFAGVSLFAALGFL 193
>At1g14530.1 68414.m01723 tobamovirus multiplication protein 3,
putative / TOM3, putative (THH1) identical to THH1
(GI:15706301) [Arabidopsis thaliana]; supporting cDNA
gi|15706300|dbj|AB057678.1|
Length = 293
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = -3
Query: 461 GCTPPLFTCFSTC*MNFCCLAPFLFFKPNVLSSITFSFFFCSVFLLAPLGFL 306
G P FT + + L L++KP L I FF V L A LGFL
Sbjct: 142 GLRPSFFTINAVVYVIQIALWLVLWWKPVHLMVIISKMFFAGVSLFAALGFL 193
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 27.5 bits (58), Expect = 10.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 587 VVCAFFKQGQCAKGDRCKFSH 649
V C++F +G C G C+F H
Sbjct: 152 VPCSYFARGFCKNGASCRFVH 172
>At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 448
Score = 27.5 bits (58), Expect = 10.0
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 578 PKSVVCAFF-KQGQCAKGDRCKFSHDL 655
P + C+F+ + G C G CKF+H L
Sbjct: 111 PGAEDCSFYMRTGSCKFGSSCKFNHPL 137
>At3g47930.1 68416.m05226 L-galactono-1,4-lactone dehydrogenase,
putative strong similarity to L-galactono-1,4-lactone
dehydrogenase, Brassica oleracea, Z97060 [gi:2760543],
and gi:3986289 from Ipomea batatas
Length = 610
Score = 27.5 bits (58), Expect = 10.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 172 IEPILIRPLDQTEIDRISQSVSVVRFAT*KVRQLCVTRRNLTMPPKKP 315
+ +L+R + +S S S +R + R LC T + LT PP P
Sbjct: 2 LRSLLLRRSVGHSLGTLSPSSSTIRSSFSPHRTLCTTGQTLTPPPPPP 49
>At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein /
GYF domain-containing protein contains Pfam domains
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF02213: GYF domain
Length = 659
Score = 27.5 bits (58), Expect = 10.0
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +2
Query: 590 VCAFFKQ-GQCAKGDRCKFSHD 652
VC FF++ G C KG C + H+
Sbjct: 638 VCKFFRENGHCRKGASCNYLHN 659
>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 536
Score = 27.5 bits (58), Expect = 10.0
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +2
Query: 590 VCAFFKQGQCAKGDRCKFSHDLTIERK 670
+C +F +G C G+ C++ H I +
Sbjct: 161 ICHYFNKGFCKHGNNCRYFHGQIIPER 187
>At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 27.5 bits (58), Expect = 10.0
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +2
Query: 593 CAFFKQ-GQCAKGDRCKFSH 649
C FF G C GD CK+SH
Sbjct: 267 CRFFMNTGTCKYGDDCKYSH 286
>At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 27.5 bits (58), Expect = 10.0
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +2
Query: 593 CAFFKQ-GQCAKGDRCKFSH 649
C FF G C GD CK+SH
Sbjct: 267 CRFFMNTGTCKYGDDCKYSH 286
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,029,088
Number of Sequences: 28952
Number of extensions: 195420
Number of successful extensions: 590
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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