Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0184
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 80 3e-16
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 30 0.42
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch... 29 0.97
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 2.2
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 27 3.0
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 27 3.0
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom... 26 5.2
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces... 26 5.2
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar... 26 6.9
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 26 6.9
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 26 6.9
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 9.1
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 25 9.1
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 80.2 bits (189), Expect = 3e-16
Identities = 48/137 (35%), Positives = 74/137 (54%)
Frame = +2
Query: 362 MPVVLLGDIFDALTLNKCEQLFSYIEKGVSIWKEELFFVACKNNLLRMCNDLLRRLSRSQ 541
+P ++L ++ D T+N+C +L+ Y E S+ K + LLR+ N+LLRRLSR +
Sbjct: 101 LPFLILEELMDIHTVNECAKLYEYFETRPSLMKGIVSNRGRGPVLLRISNELLRRLSRQE 160
Query: 542 NTVFCGRILLFLAKFFPFSERSGLNIVSEFNLENITEFGVDNSSTLKDALEEEMVIDNEK 721
N+ FCGRI + L+K FP ERSG N+ ++N + FG S + + + K
Sbjct: 161 NSSFCGRIDILLSKAFPPEERSGANLRGDYN--TVHSFGKVELSPPSTPISDRTDLSYHK 218
Query: 722 HKLTIDYNLYCRFWSLQ 772
KL L+ +W LQ
Sbjct: 219 -KLN---TLFTAYWDLQ 231
>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 128
Score = 29.9 bits (64), Expect = 0.42
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 134 LRILVCSTYWSYSMLLLHF 78
+R+L+ STYWSYS+ HF
Sbjct: 86 VRLLLFSTYWSYSLASQHF 104
>SPAC1486.06 |||nicotinate phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 410
Score = 28.7 bits (61), Expect = 0.97
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +2
Query: 287 EDHNTLENFVSFCIESCRRLMVTPTMPVVLLGDIFDALTLNKCEQLFSYIEK 442
+D E ++ ++ + + V P+ V++ D AL +++C +L+ Y EK
Sbjct: 289 QDSGCAEEYIEKVVKHYKSIGVDPSTKVIVHSD---ALNVDRCIELYKYCEK 337
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 237 KQLWTKHLGI-SYLNYLLRIITLLKILYRSA*NHAGDLWLRQQCLLYYLAISLTPSH*IN 413
KQL+++ +G+ + L T+LK + S + DLWL ++ Y A ++ ++
Sbjct: 3476 KQLFSRRIGMFENIQKLYSPSTILKDYFSSIFTNYSDLWLFRKNFSYQYACFSFITYILS 3535
Query: 414 VNN 422
+NN
Sbjct: 3536 INN 3538
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 27.1 bits (57), Expect = 3.0
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 203 SFSKNTDETDRKAAMDQAFRDKL--LELLTEDHNTLENFVSFCIESCRRLMVTPTMPVVL 376
+FSK TD+ K++ ++ F+ L L ++E+ + + V +E + + M V L
Sbjct: 527 AFSKLTDDVTAKSSSEETFKQYLSVLVSISEERSLFKALVIRLVEMLKDQFKSKEMSVDL 586
Query: 377 LGDIFDALTL 406
+ I +L++
Sbjct: 587 VESIVQSLSV 596
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 575 LAKFFPFSERSGLNIVSEFNLENITEFGVDNS 670
L++ F ++ + +IVS NL+N+T VDN+
Sbjct: 477 LSRLFDYAPQFERSIVSSSNLQNLTLENVDNT 508
>SPBC119.04 |mei3||meiosis inducing protein Mei3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 96 RIRPICRANQDSKNSARNTKMYFLKPLQRTTLTSSILFPKTLTKL 230
R P R ++K + + K+Y +KP+QR S + T+ L
Sbjct: 83 RRTPAQRIEHENKENIQTEKVYRIKPVQRVLSPSDLTNELTILDL 127
>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 316
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -3
Query: 584 ILPKKVEYVHRKLYFEIEKVFL 519
+L K +Y+HR+++FE +K F+
Sbjct: 204 LLLKDQQYLHRQVFFEYDKKFV 225
>SPAC26H5.09c |||GFO/IDH/MocA family
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 369
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -3
Query: 731 SVYVFHYQ*PFL--LPKHLSVYLNYQHQ 654
S ++FHY PFL LP H VY ++ +
Sbjct: 14 SAFIFHY--PFLKALPNHFEVYAAWERR 39
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 181 RCKGFRKYIFVFRAEFFESWFARHI 107
R FR +++VF A F +WF +I
Sbjct: 258 RISPFRFFLYVFIASFIWNWFPSYI 282
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 6.9
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Frame = -2
Query: 654 NSVIFSKLNSETILXPERSE--NGKNFAKKSRIRPQKTVF*DRESLLNKSL------HIL 499
NS++ +L ++ E N K + S ++P++TV + L N S+ H+
Sbjct: 44 NSILCKQLKELDLVVSSNKEFLNEKTSDQISFLKPRETVV--EKKLANGSIWPNETSHLD 101
Query: 498 NKLFLHATKNSSSFHILTPFSMYENNCSHL 409
L + N +TP+ + ENN +HL
Sbjct: 102 KSRDLSSHSNGLDALAMTPYIVKENNKTHL 131
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -2
Query: 441 FSMYENNCSHLFSVRASKISPSNTTGIVGVTI 346
F ++ NN + +I+PS T +VG +
Sbjct: 786 FYLFRNNMFQFIEIYVQRINPSKTPQVVGALL 817
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 150 TKMYFLKPLQRTTLTSSILFPKTLTKLTEKQLWTKHLGISYLNYLLRIITLLKI 311
T +L PL + + LF + + LW + ++YL+ L+ +T+ KI
Sbjct: 99 TPSKYLFPLSKDYSPNEGLFQTDMNEKNPHDLWNPTVPMAYLSRSLQGLTISKI 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,513
Number of Sequences: 5004
Number of extensions: 66573
Number of successful extensions: 250
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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