Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0184
         (772 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36529-1|AAA53571.1|  657|Homo sapiens protein p84 protein.           183   5e-46
BC010381-1|AAH10381.1|  657|Homo sapiens THO complex 1 protein.       182   1e-45
AY573303-1|AAT81409.1|  377|Homo sapiens death domain-containing...   182   1e-45
AY573302-1|AAT81408.1|   86|Homo sapiens death domain-containing...    30   8.0  

>L36529-1|AAA53571.1|  657|Homo sapiens protein p84 protein.
          Length = 657

 Score =  183 bits (446), Expect = 5e-46
 Identities = 105/232 (45%), Positives = 144/232 (62%), Gaps = 19/232 (8%)
 Frame = +2

Query: 134 ELRTKYKDVLSKAFATNNID-LIDSFSKNT-DETDRKAAMDQAFRDKLLELLTEDHNTLE 307
           E RT++     +A    NI  L+ +FS+    E ++K  +DQAFR  L E +  +H++ E
Sbjct: 12  EARTRFTKSTREALNNKNIKPLLSTFSQVPGSENEKKCTLDQAFRGILEEEII-NHSSCE 70

Query: 308 N---FVSFCIESCRRLMVTPTMPVVLLGDIFDALTLNKCEQLFSYIEKGVSIWKEELFFV 478
           N    +S  I      + T + P VLLGD+ D L L++C+ +F+++EK V+ WK   F+ 
Sbjct: 71  NVLAIISLAIGGVTEGICTASTPFVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYA 130

Query: 479 ACKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIVSEFNLENITEFG 658
           A KN LLRMCNDLLRRLS+SQNTVFCGRI LFLA+ FP SE+SGLN+ S+FNLEN+T F 
Sbjct: 131 AGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVFN 190

Query: 659 V-DNSSTL--KDALEEEMVIDNEKHK-----------LTIDYNLYCRFWSLQ 772
             +  STL  K   + E  +D E+ +           + IDYNLY +FWSLQ
Sbjct: 191 TNEQESTLGQKHTEDREEGMDVEEGEMGDEEAPTTCSIPIDYNLYRKFWSLQ 242


>BC010381-1|AAH10381.1|  657|Homo sapiens THO complex 1 protein.
          Length = 657

 Score =  182 bits (444), Expect = 1e-45
 Identities = 105/232 (45%), Positives = 144/232 (62%), Gaps = 19/232 (8%)
 Frame = +2

Query: 134 ELRTKYKDVLSKAFATNNID-LIDSFSKNT-DETDRKAAMDQAFRDKLLELLTEDHNTLE 307
           E RT++     +A    NI  L+ +FS+    E ++K  +DQAFR  L E +  +H++ E
Sbjct: 12  EARTRFTKSTREALNNKNIKPLLSTFSQVPGSENEKKCTLDQAFRGILEEEII-NHSSCE 70

Query: 308 N---FVSFCIESCRRLMVTPTMPVVLLGDIFDALTLNKCEQLFSYIEKGVSIWKEELFFV 478
           N    +S  I      + T + P VLLGD+ D L L++C+ +F+++EK V+ WK   F+ 
Sbjct: 71  NVLAIISLAIGGVTEGICTASTPFVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYS 130

Query: 479 ACKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIVSEFNLENITEFG 658
           A KN LLRMCNDLLRRLS+SQNTVFCGRI LFLA+ FP SE+SGLN+ S+FNLEN+T F 
Sbjct: 131 AGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVFN 190

Query: 659 V-DNSSTL--KDALEEEMVIDNEKHK-----------LTIDYNLYCRFWSLQ 772
             +  STL  K   + E  +D E+ +           + IDYNLY +FWSLQ
Sbjct: 191 TNEQESTLGQKHTEDREEGMDVEEGEMGDEEAPTTCSIPIDYNLYRKFWSLQ 242


>AY573303-1|AAT81409.1|  377|Homo sapiens death domain-containing
           protein p84N5 short isoform protein.
          Length = 377

 Score =  182 bits (444), Expect = 1e-45
 Identities = 105/232 (45%), Positives = 144/232 (62%), Gaps = 19/232 (8%)
 Frame = +2

Query: 134 ELRTKYKDVLSKAFATNNID-LIDSFSKNT-DETDRKAAMDQAFRDKLLELLTEDHNTLE 307
           E RT++     +A    NI  L+ +FS+    E ++K  +DQAFR  L E +  +H++ E
Sbjct: 12  EARTRFTKSTREALNNKNIKPLLSTFSQVPGSENEKKCTLDQAFRGILEEEII-NHSSCE 70

Query: 308 N---FVSFCIESCRRLMVTPTMPVVLLGDIFDALTLNKCEQLFSYIEKGVSIWKEELFFV 478
           N    +S  I      + T + P VLLGD+ D L L++C+ +F+++EK V+ WK   F+ 
Sbjct: 71  NVLAIISLAIGGVTEGICTASTPFVLLGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYS 130

Query: 479 ACKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIVSEFNLENITEFG 658
           A KN LLRMCNDLLRRLS+SQNTVFCGRI LFLA+ FP SE+SGLN+ S+FNLEN+T F 
Sbjct: 131 AGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFNLENVTVFN 190

Query: 659 V-DNSSTL--KDALEEEMVIDNEKHK-----------LTIDYNLYCRFWSLQ 772
             +  STL  K   + E  +D E+ +           + IDYNLY +FWSLQ
Sbjct: 191 TNEQESTLGQKHTEDREEGMDVEEGEMGDEEAPTTCSIPIDYNLYRKFWSLQ 242


>AY573302-1|AAT81408.1|   86|Homo sapiens death domain-containing
           protein p84N5 short isoform 2 protein.
          Length = 86

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = +2

Query: 134 ELRTKYKDVLSKAFATNNID-LIDSFSKNT-DETDRKAAMDQAFRDKLLELLTEDHNTLE 307
           E RT++     +A    NI  L+ +FS+    E ++K  +DQAFR  +LE    +H++ E
Sbjct: 12  EARTRFTKSTREALNNKNIKPLLSTFSQVPGSENEKKCTLDQAFRG-ILEEEIINHSSCE 70

Query: 308 NFVS 319
           + ++
Sbjct: 71  HVLA 74


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,350,252
Number of Sequences: 237096
Number of extensions: 1978274
Number of successful extensions: 4022
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4016
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)