Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0184
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical...   107   7e-24
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    31   0.91 
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    31   0.91 
U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine rece...    31   0.91 
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      31   0.91 
U43283-2|AAC69020.1|  205|Caenorhabditis elegans Rab family prot...    30   2.1  
U39849-6|AAM81124.1|  642|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U39849-5|AAA81048.2|  663|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical ...    29   3.7  
AC006604-1|AAF39751.1|  484|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z81532-3|CAC70088.2|  659|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AL021503-2|CAA16421.1|  320|Caenorhabditis elegans Hypothetical ...    28   6.4  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    28   6.4  

>AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical
           protein T02H6.2 protein.
          Length = 665

 Score =  107 bits (258), Expect = 7e-24
 Identities = 49/123 (39%), Positives = 81/123 (65%), Gaps = 1/123 (0%)
 Frame = +2

Query: 326 IESCRRL-MVTPTMPVVLLGDIFDALTLNKCEQLFSYIEKGVSIWKEELFFVACKNNLLR 502
           + +C +L + +   P+  L D+ +  ++ +C+Q+FS +E+ ++ +K+  F    +NN+LR
Sbjct: 64  VMNCSKLGLCSKNTPLSTLQDLLEMSSIEECKQIFSIVEENMNEFKQPGFIETAQNNILR 123

Query: 503 MCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIVSEFNLENITEFGVDNSSTLK 682
            CNDLLRRLSR+  T FCGRI+ FL++F P +E+SG+N +  FN  N+T +  D S T  
Sbjct: 124 FCNDLLRRLSRTAETSFCGRIMFFLSRFLPLTEKSGVNFMGHFNTLNVTNY--DESETDG 181

Query: 683 DAL 691
           +AL
Sbjct: 182 EAL 184


>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
            protein C02F4.1 protein.
          Length = 1781

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 19/90 (21%), Positives = 35/90 (38%)
 Frame = +2

Query: 80   SVITTSNTTNMSSKPGFEELRTKYKDVLSKAFATNNIDLIDSFSKNTDETDRKAAMDQAF 259
            S++    T   +    F+ ++T+Y    S++F     +L+     N D+        + F
Sbjct: 1097 SLVDDDETREATIPIFFDMMQTEYNTSASRSFTEFASELVSQLDTNVDQHSATKGFKEHF 1156

Query: 260  RDKLLELLTEDHNTLENFVSFCIESCRRLM 349
            R   + L   D   + N     IE   RL+
Sbjct: 1157 RQLSITLCQSDKELMANGGEELIERIDRLL 1186


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein
            C02F4.1 protein.
          Length = 1781

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 19/90 (21%), Positives = 35/90 (38%)
 Frame = +2

Query: 80   SVITTSNTTNMSSKPGFEELRTKYKDVLSKAFATNNIDLIDSFSKNTDETDRKAAMDQAF 259
            S++    T   +    F+ ++T+Y    S++F     +L+     N D+        + F
Sbjct: 1097 SLVDDDETREATIPIFFDMMQTEYNTSASRSFTEFASELVSQLDTNVDQHSATKGFKEHF 1156

Query: 260  RDKLLELLTEDHNTLENFVSFCIESCRRLM 349
            R   + L   D   + N     IE   RL+
Sbjct: 1157 RQLSITLCQSDKELMANGGEELIERIDRLL 1186


>U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine
           receptor, class x protein74 protein.
          Length = 323

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 114 RANQDSKNSARNTKMYFLKPLQRTTLTSSILFPKTLTKLTEKQLW 248
           R+N+DS +  +N +++F   LQ +      LF   L  L++ ++W
Sbjct: 216 RSNEDSASIRKNIRLFFQTVLQDSVFAIDQLFTFGLNSLSDHRIW 260


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 19/90 (21%), Positives = 35/90 (38%)
 Frame = +2

Query: 80   SVITTSNTTNMSSKPGFEELRTKYKDVLSKAFATNNIDLIDSFSKNTDETDRKAAMDQAF 259
            S++    T   +    F+ ++T+Y    S++F     +L+     N D+        + F
Sbjct: 1097 SLVDDDETREATIPIFFDMMQTEYNTSASRSFTEFASELVSQLDTNVDQHSATKGFKEHF 1156

Query: 260  RDKLLELLTEDHNTLENFVSFCIESCRRLM 349
            R   + L   D   + N     IE   RL+
Sbjct: 1157 RQLSITLCQSDKELMANGGEELIERIDRLL 1186


>U43283-2|AAC69020.1|  205|Caenorhabditis elegans Rab family protein
           6.2 protein.
          Length = 205

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +2

Query: 26  KYRNKI-S*IFNSDCQLIKSVITTSNTTNMSSKPGFEELRTKYKDVLSKAFATNNIDLID 202
           ++R+ I S I +S   ++   IT SN+ + +SK   +++RT+    +      N  DL D
Sbjct: 71  RFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSK-WIDDVRTERGSDVIIMLVGNKTDLSD 129

Query: 203 SFSKNTDETDRKA 241
                TDE +RKA
Sbjct: 130 KRQVTTDEGERKA 142


>U39849-6|AAM81124.1|  642|Caenorhabditis elegans Hypothetical
           protein C06A8.1b protein.
          Length = 642

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 272 LELLTEDHNTLENF-VSFCIESCRRLMVTPTMPVVLLGDIFDALTLNKCEQLFSYIEKGV 448
           LE +  D + ++ +    CIE CRRL+   T P + L       T+N+ E     I K +
Sbjct: 276 LEPIKHDDDAVQKYGTERCIEMCRRLLDNGTAPSIHL------YTMNR-EGSIREILKSL 328

Query: 449 SIWKEE 466
            +WK E
Sbjct: 329 GLWKLE 334


>U39849-5|AAA81048.2|  663|Caenorhabditis elegans Hypothetical
           protein C06A8.1a protein.
          Length = 663

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 272 LELLTEDHNTLENF-VSFCIESCRRLMVTPTMPVVLLGDIFDALTLNKCEQLFSYIEKGV 448
           LE +  D + ++ +    CIE CRRL+   T P + L       T+N+ E     I K +
Sbjct: 297 LEPIKHDDDAVQKYGTERCIEMCRRLLDNGTAPSIHL------YTMNR-EGSIREILKSL 349

Query: 449 SIWKEE 466
            +WK E
Sbjct: 350 GLWKLE 355


>AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical
           protein Y11D7A.9 protein.
          Length = 297

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 23/108 (21%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
 Frame = +3

Query: 156 MYFLKPLQRTTLTSSILFPKTLTKLTEKQLWTKHLGISYLNYLLRIITLLKILYRSA*NH 335
           + F  P++   L +     K +  +  K++W   L      YL  ++ LL++++ S  + 
Sbjct: 106 LLFHVPIRVVELITGFSRYKRMRNVNYKRVWLYELS----RYLYFVVGLLELIFLSGLSI 161

Query: 336 AGDLWLRQQCLLYYLAISLTPS-H*I-NVNNYSHTLKKVSVYGRKNYF 473
            G+    Q  ++++    +    H I N+  ++H+L  ++ YGR +Y+
Sbjct: 162 IGERENIQVHVIFFYVFGICGIVHMISNIFCHAHSLYYLNPYGRLSYY 209


>AC006604-1|AAF39751.1|  484|Caenorhabditis elegans Hypothetical
           protein C07F11.2 protein.
          Length = 484

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +2

Query: 140 RTKYKDVLSKAFATNNIDLIDS--FSKNTDETDRKAAMDQAFRDKLLELLTEDHNTLENF 313
           +TKY+  +          L D     K  D   R+A++   FR+   E + +DH      
Sbjct: 209 KTKYESKVQMILDEEREKLCDKREMLKEDDGGSRRASLISQFRENQHESVLDDHMFKRIL 268

Query: 314 VSFCIESCRR 343
           VS C ESC +
Sbjct: 269 VS-CCESCEQ 277


>Z81532-3|CAC70088.2|  659|Caenorhabditis elegans Hypothetical
           protein F36F2.6 protein.
          Length = 659

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 659 VDNSSTLKDALEEEMVIDNEKHKLTIDYNLYCRFWS 766
           VD   T+    ++ M +D E HK    YNL+ R ++
Sbjct: 148 VDLDQTIIHTSDKPMTVDTENHKDITKYNLHSRVYT 183


>AL021503-2|CAA16421.1|  320|Caenorhabditis elegans Hypothetical
           protein Y68A4A.3 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 459 RKNYFSWHAKIIY*ECVMIY*EDFLDLKIQFSVDVFYFFWQNSFHSLNAPXLI 617
           +K  F+ +   I+  C  I+ ++  DLKI+  V V  +FW    H ++ P  I
Sbjct: 158 KKMQFTGNQSSIF--CYRIHFQEAFDLKIEECVYVASYFWPVDNHGVSYPDTI 208


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
 Frame = +2

Query: 404  LNKCEQLFSYIEKGVSIWKEELFFVACK----NNLLRMCNDLLRRLSRSQN-TVFCGRIL 568
            LN+   + S+I K   I+ EE +F+  +    + L    N+  R+L R    + FC    
Sbjct: 2217 LNRKSLIISFITKSSVIFLEECYFIVSQIYLFSKLYLTLNESNRQLFRVHRFSTFCFSQF 2276

Query: 569  LFLAKFFPFSERSGLNIVSEF---NLENITEFGVDNSSTLKDA 688
            +F      F  R  ++I  +    +L++ T F VD S    D+
Sbjct: 2277 IFFIILIKF--RISISITDDIPKEHLQDSTGFHVDQSRDSLDS 2317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,858,810
Number of Sequences: 27780
Number of extensions: 360779
Number of successful extensions: 1064
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)