Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0184
(772 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09860.1 68418.m01140 nuclear matrix protein-related low simi... 101 7e-22
At2g28590.1 68415.m03474 protein kinase family protein contains ... 33 0.21
At5g54510.1 68418.m06787 auxin-responsive GH3 protein, putative ... 33 0.28
At1g07870.1 68414.m00854 protein kinase family protein contains ... 32 0.48
At4g13190.1 68417.m02051 protein kinase family protein similar t... 31 1.1
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 29 2.6
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 29 2.6
At3g24790.1 68416.m03111 protein kinase family protein contains ... 29 4.5
At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family... 28 5.9
At4g35230.1 68417.m05007 protein kinase family protein contains ... 28 7.9
At4g18640.1 68417.m02759 leucine-rich repeat transmembrane prote... 28 7.9
At2g39180.1 68415.m04812 protein kinase family protein contains ... 28 7.9
At1g69340.1 68414.m07956 appr-1-p processing enzyme family prote... 28 7.9
>At5g09860.1 68418.m01140 nuclear matrix protein-related low
similarity to nuclear matrix protein p84 [Homo sapiens]
GI:550058
Length = 599
Score = 101 bits (241), Expect = 7e-22
Identities = 58/160 (36%), Positives = 82/160 (51%)
Frame = +2
Query: 293 HNTLENFVSFCIESCRRLMVTPTMPVVLLGDIFDALTLNKCEQLFSYIEKGVSIWKEELF 472
H + + + + C + V M LL D+ + T+ C+ +F YIE I ++
Sbjct: 81 HGQIPHLLDVVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDVFGYIESKQDILGKQEL 140
Query: 473 FVACKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIVSEFNLENITE 652
F K +LR CN LLRRLS++ + VFCGRIL+FLA FFP SERS +NI FN N T+
Sbjct: 141 FARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETK 200
Query: 653 FGVDNSSTLKDALEEEMVIDNEKHKLTIDYNLYCRFWSLQ 772
+ D +++D+N Y FWSLQ
Sbjct: 201 YEKD-----------------PPKGISVDFNFYKTFWSLQ 223
>At2g28590.1 68415.m03474 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 424
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +2
Query: 224 ETDRKAAMDQAFRDKLLELLT---EDHNTLENFVSFCIESCRRLMVTPTMPV 370
+ DR A Q R+ ++E+LT DH L + FC E +RL+V MP+
Sbjct: 128 QLDRNGA--QGIREFVVEVLTLSLADHPNLVKLIGFCAEGVQRLLVYEYMPL 177
>At5g54510.1 68418.m06787 auxin-responsive GH3 protein, putative
(DFL-1) identical to auxin-responsive GH3 homologue
[Arabidopsis thaliana] GI:11041726; similar to
auxin-responsive GH3 product [Glycine max] GI:18591;
contains Pfam profile PF03321: GH3 auxin-responsive
promoter
Length = 612
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 99 IRPICRANQDSKNSARNTKMYFLKPLQRTT-LTSSILFPKTLTKLTEKQL 245
+RP+C+ ++ S N + P+ R + +TSSI PK LT+ +++L
Sbjct: 349 LRPLCKPSEVSYTLIPNMAYFEFLPVHRNSGVTSSISLPKALTEKEQQEL 398
>At1g07870.1 68414.m00854 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 423
Score = 31.9 bits (69), Expect = 0.48
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 251 QAFRDKLLELLT---EDHNTLENFVSFCIESCRRLMVTPTMPVVLLGDIFDALTLNK 412
Q R+ ++E+LT DH L + FC E +RL+V MP L D L K
Sbjct: 140 QGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPQGSLEDHLHVLPSGK 196
>At4g13190.1 68417.m02051 protein kinase family protein similar to
serine/threonine kinase BNK1 [Brassica napus]
gi|10445209|gb|AAG16628; contains protein kinase domain,
Pfam:PF00069
Length = 405
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +2
Query: 248 DQAFRDKLLELLTEDHNTLENFVSFCIESCRRLMVTPTMPVVLLGD-IFDALTLNKCEQL 424
++ F ++ L H L N + +C++ +RL+V MP+ L D + + T+ +L
Sbjct: 110 NREFLVEIFRLSLLHHPNLANLIGYCLDGDQRLLVHEFMPLGSLEDHLLEFCTI--VMEL 167
Query: 425 FSY-IEKGVSIWKEEL 469
F+Y IE V + ++ L
Sbjct: 168 FNYLIEPDVVVGQQPL 183
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/107 (25%), Positives = 49/107 (45%)
Frame = +2
Query: 245 MDQAFRDKLLELLTEDHNTLENFVSFCIESCRRLMVTPTMPVVLLGDIFDALTLNKCEQL 424
MD+A DKLL E ++E+ +SF ES + LM + T PV + D D N +
Sbjct: 279 MDEA--DKLLS--QEFQPSVEHLISFLPESRQILMFSATFPVT-VKDFKDRFLTN--PYV 331
Query: 425 FSYIEKGVSIWKEELFFVACKNNLLRMCNDLLRRLSRSQNTVFCGRI 565
+ +++ + + + + N L +L +Q+ +FC +
Sbjct: 332 INLMDELTLKGITQFYAFVEERQKIHCLNTLFSKLQINQSIIFCNSV 378
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/107 (25%), Positives = 49/107 (45%)
Frame = +2
Query: 245 MDQAFRDKLLELLTEDHNTLENFVSFCIESCRRLMVTPTMPVVLLGDIFDALTLNKCEQL 424
MD+A DKLL E ++E+ +SF ES + LM + T PV + D D N +
Sbjct: 279 MDEA--DKLLS--QEFQPSVEHLISFLPESRQILMFSATFPVT-VKDFKDRFLTN--PYV 331
Query: 425 FSYIEKGVSIWKEELFFVACKNNLLRMCNDLLRRLSRSQNTVFCGRI 565
+ +++ + + + + N L +L +Q+ +FC +
Sbjct: 332 INLMDELTLKGITQFYAFVEERQKIHCLNTLFSKLQINQSIIFCNSV 378
>At3g24790.1 68416.m03111 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 379
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 224 ETDRKAAMDQA-FRDKLLELLTEDHNTLENFVSFCIESCRRLMVTPTMPVVLLGD 385
+ DR Q F ++L L H L N + +C + +RL+V MP+ L D
Sbjct: 93 QLDRNGLQGQREFLVEVLMLSLLHHRNLVNLIGYCADGDQRLLVYEYMPLGSLED 147
>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
protein (ROS1) similar to DEMETER protein [Arabidopsis
thaliana] GI:21743571; contains Pfam profile PF00730:
HhH-GPD superfamily base excision DNA repair protein
Length = 1393
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 177 QRTTLTSSILFPKTLTKLTEKQLWTKHLGISYLNYLLRIITL 302
Q+ L + FP + T L+ +LW + I ++ LLR++ +
Sbjct: 445 QKNLLPNLCRFPPSFTGLSPDELWKRRNSIETISELLRLLDI 486
>At4g35230.1 68417.m05007 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 512
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 293 HNTLENFVSFCIESCRRLMVTPTMP 367
HN L N + +C + RL+V MP
Sbjct: 129 HNRLANLIGYCCDGDERLLVAEFMP 153
>At4g18640.1 68417.m02759 leucine-rich repeat transmembrane protein
kinase, putative
Length = 686
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +2
Query: 167 KAFATNNIDLIDSFSKNTDETDRKAAMDQAFRDKLLELLTEDHNTLENFVSFCIES--CR 340
K ++ +++ + + + + AM+ A+R K+ L +H N + +C E
Sbjct: 400 KGTLSSGVEIAVASTAIAESKEWTRAMEMAYRRKIDTLSRINHKNFVNLIGYCEEDDPFN 459
Query: 341 RLMVTPTMPVVLLGDIFDALTLNKCEQL 424
R+MV P G +F+ L +N +L
Sbjct: 460 RMMVFEYAP---NGTLFEHLHVNNVFRL 484
>At2g39180.1 68415.m04812 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 776
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 248 DQAFRDKLLELLTEDHNTLENFVSFCIESCRRLMVTPTMPVVLLGD 385
++ F +L L HN + N + +C E RL+V MP L D
Sbjct: 559 NRGFESELEILCKIRHNNIVNLLGYCSEMGERLLVYEYMPHGTLHD 604
>At1g69340.1 68414.m07956 appr-1-p processing enzyme family protein
contains Pfam domain PF01661: Appr-1-p processing enzyme
family
Length = 562
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 293 HNTLENFVSFCIESCRRLMVTPTMPVVLLGDIF 391
H EN +S C SC L++ + + LG I+
Sbjct: 168 HTAAENALSHCYRSCLELLIDSGLQSIALGCIY 200
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,303,683
Number of Sequences: 28952
Number of extensions: 310109
Number of successful extensions: 981
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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