Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0183
         (717 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    37   0.57 
UniRef50_A5CWA8 Cluster: Rubisco regulator CbbO; n=3; Bacteria|R...    34   3.0  
UniRef50_Q8RCK6 Cluster: Predicted permease; n=5; Clostridia|Rep...    33   5.3  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 36.7 bits (81), Expect = 0.57
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = -3

Query: 133 YLLLSWVDEFTSHLMLSGYRS 71
           +LLL WVDE T+HL+LSGY S
Sbjct: 154 FLLLRWVDELTAHLVLSGYWS 174


>UniRef50_A5CWA8 Cluster: Rubisco regulator CbbO; n=3; Bacteria|Rep:
           Rubisco regulator CbbO - Vesicomyosocius okutanii subsp.
           Calyptogena okutanii (strain HA)
          Length = 748

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +1

Query: 289 VVAFMSCKRKLPMCALHTSIMLLCKVDNPSSNYKNKVILFLFIISGFLQRLNESEVDSSD 468
           +V    C  K   C  H +IML   + + + +YKNK++  L  +  F   +N  +  +SD
Sbjct: 326 IVDEFDCDDKYQSCLRHRAIMLTYALLDDNHHYKNKIL--LDYVEKFKTLMNTGKTSTSD 383

Query: 469 SL 474
           SL
Sbjct: 384 SL 385


>UniRef50_Q8RCK6 Cluster: Predicted permease; n=5; Clostridia|Rep:
           Predicted permease - Thermoanaerobacter tengcongensis
          Length = 315

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 187 SASAIVHVYLILPF*GYYYLLLSWVDEFTSHLMLSGYRSLSIM*NVIVNVAT 32
           S   ++ +  IL   GYY   + W D FT+ L      ++S+  N+I+N++T
Sbjct: 7   SVQGVLIIVFILAL-GYYLSKIGWFDSFTADLFAKLVINVSLPLNMIINIST 57


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,984,397
Number of Sequences: 1657284
Number of extensions: 12695650
Number of successful extensions: 19919
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19915
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)