Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0183
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.0  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    27   3.5  
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    27   3.5  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 255  ETRKQILAQLFCRGLYELQKEITHVCVTYINHVTVQS 365
            +TR +I+A +F + LY   KEI  V +  + HV  Q+
Sbjct: 1396 QTRTKIIA-IFFKDLYSPHKEIYSVAIDALRHVLSQN 1431


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 374 GLSTLHSNMI--DVCNAHMGNFLLQLIKATTKQLC*YLLS 261
           GL  +H ++   ++C AH    LL L KA T+ +  Y  S
Sbjct: 761 GLIAMHEDLEAKEICQAHFKTALLALRKAITRDMLEYYAS 800


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 310 KRKLPMCALHTSIMLLCKVDNPSSNYKNK 396
           K KL  C    SIM+ C   N S N+KN+
Sbjct: 265 KAKLEECNKLPSIMIDCSHGNSSKNHKNQ 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,399
Number of Sequences: 5004
Number of extensions: 56105
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)