Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0183
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0598 + 19858004-19858192,19858295-19858926,19859001-198590...    29   4.9  

>07_03_0598 +
           19858004-19858192,19858295-19858926,19859001-19859057,
           19859159-19859397,19859903-19860097,19860140-19860226,
           19861086-19861201
          Length = 504

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +1

Query: 25  HDGWR--HLRLHFTLSIGSGNHLTSGGS*THPPTKAINNNNLKMAK*DRHEQWQTQNLVS 198
           HD WR  H   +F +     N L  GG+ T  P +A+ N N    +  + ++  T NLVS
Sbjct: 443 HD-WRDAHPNTYFNMD-HIQNRLEQGGTVTAFPCRAVENTNSSKGRRQQSKRQATINLVS 500


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,755,516
Number of Sequences: 37544
Number of extensions: 338224
Number of successful extensions: 549
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)