Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0183
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   5.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.8  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/34 (23%), Positives = 14/34 (41%)
 Frame = +3

Query: 171 TMADAEPCFILAPH*NDDHTSKYSCIINETRKQI 272
           T  D     ++  H + DH   YSC+      ++
Sbjct: 661 TNMDQYNSILMIEHLSPDHNGNYSCVARNLAAEV 694


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +1

Query: 277 HSCFVVAFMSCKRKLPMCAL--HTSIMLLCKVDNP 375
           +S  +VA+    RKLP   L  HT I L  K   P
Sbjct: 238 YSLGIVAWQMLFRKLPFAGLHSHTIIYLSAKGHRP 272


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 329 HMGNFLLQL 303
           HMGNFL+Q+
Sbjct: 212 HMGNFLIQV 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,113
Number of Sequences: 438
Number of extensions: 4261
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)