Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0179
         (890 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    24   1.8  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    24   1.8  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   3.2  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 37  NSNLEVNHGHQQVVYHQVSGAGTYVFVRRS 126
           N N E N+ H   +YH+V     Y   R S
Sbjct: 32  NQNTEQNYTHNNEMYHRVKEEPIYESCRFS 61


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 37  NSNLEVNHGHQQVVYHQVSGAGTYVFVRRS 126
           N N E N+ H   +YH+V     Y   R S
Sbjct: 32  NQNTEQNYTHNNEMYHRVKEEPIYESCRFS 61


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 37  NSNLEVNHGHQQVVYHQVSGAGTYVFVRRS 126
           N N E N+ H   +YH V     Y   R S
Sbjct: 32  NQNTEHNYTHNNEMYHSVKEEPIYESCRFS 61


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,362
Number of Sequences: 336
Number of extensions: 3402
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)