Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0179
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    29   1.2  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   3.6  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   4.7  
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    26   6.3  
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         26   6.3  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    26   8.3  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    26   8.3  

>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +2

Query: 137 SYNADADIGMLVTGTFVGYLIIFAGAAAGYIMQT---PSHKRIDIFYSLVG 280
           SYN + ++ +     F+G+L++  G   GY +     P +  +  F S VG
Sbjct: 17  SYNENTNLSLKTIDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGFISCVG 67


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 524 SNPNKTALYLYAAFEILF*LCSSILCT*FSL 432
           SNPNK ++Y+Y  F     LCS  L    SL
Sbjct: 72  SNPNKFSIYIYIYFFFYSFLCSPYLFKYISL 102


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 485 MLHTNTMLSY*DYYGPPNNVNSTAITVT 568
           ++HTNT +S       P N N+T +++T
Sbjct: 95  LIHTNTSISKPSQTATPQNTNTTQVSLT 122


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = -2

Query: 211 TSEYDEVPDKGTGDEHANIRICIVTVVMESDARTRKCQLQKLDDRQPADGHDS 53
           ++E  +V + G+ D+  NIR  +V  V E+D RT   Q  K +  +PA   D+
Sbjct: 17  SAEQLDVVESGSIDQQ-NIRAWVVRKVKENDKRTSTNQSFKWEAVKPASCLDA 68


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 122 ALHYHSYNADADIGMLVTGTFVGYLII--FAGAAAGYIM 232
           A  Y S+   A I ML+  +F GY I+  F GA  G+ +
Sbjct: 116 AAMYSSFYLSATILMLIVMSFNGYAILFGFVGAWIGFFL 154


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 193 VPDKGTGDEHANIRICIVTVVMESDARTRKC-QLQKLDDRQPAD 65
           +P+K T D + N     V  V++S  R R+  QL+ LDD Q  D
Sbjct: 34  LPEKSTSD-YENSGKGTVGQVLQSLQRVRRALQLRSLDDNQSTD 76


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 319 VNNNGTASDEQGNTDQRI-EDVDPFV*RSLHYVARGRTSEYDEVPDKGTGDEHA 161
           V+ N        + D+RI E V P   R+ +     RT ++DE+P    GD  +
Sbjct: 302 VDTNNVELTNASSQDRRINEGVRPIFWRTRNESYVSRTDQWDELPHGRWGDSRS 355


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 205 RWCGRGLHNADSFTQTDRHLLFAGRCCLVRR*RC 306
           R+  R LH+   F Q  RHL+  G+  + R   C
Sbjct: 88  RFVTRSLHDVGDFEQCKRHLVENGKLFIQRARAC 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,285
Number of Sequences: 5004
Number of extensions: 52443
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)