Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0179
         (890 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC041812-1|AAH41812.1|  208|Homo sapiens chromosome 20 open read...    35   0.46 
U93239-1|AAB51391.1|  399|Homo sapiens Sec62 protein.                  30   9.8  
D87127-1|BAA13254.1|  399|Homo sapiens translocation protein-1 p...    30   9.8  
BC012035-1|AAH12035.1|  399|Homo sapiens TLOC1 protein protein.        30   9.8  
AB024586-1|BAB12685.1|  399|Homo sapiens translocation protein 1...    30   9.8  

>BC041812-1|AAH41812.1|  208|Homo sapiens chromosome 20 open reading
           frame 58 protein.
          Length = 208

 Score = 34.7 bits (76), Expect = 0.46
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 237 LLHTNGSTSSIRWSV-LPCSSLAVPLLLTDSNIMVRARSKTRTWLRPRWP 383
           +++T  +   + W+V + C  L V  LL DS ++  + S+ R+W R RWP
Sbjct: 63  MVYTLWAAVWVTWNVFIICFYLEVGGLLKDSELLTFSLSRHRSWWRERWP 112


>U93239-1|AAB51391.1|  399|Homo sapiens Sec62 protein.
          Length = 399

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 179 TFV-GYLIIFAGAAAGYIMQTPSHKRIDIFYSLVGVALFVAS 301
           TFV G +++ A  AA      P+  R+ ++Y  VG   FVAS
Sbjct: 196 TFVMGLILVIAVIAATLFPLWPAEMRVGVYYLSVGAGCFVAS 237


>D87127-1|BAA13254.1|  399|Homo sapiens translocation protein-1
           protein.
          Length = 399

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 179 TFV-GYLIIFAGAAAGYIMQTPSHKRIDIFYSLVGVALFVAS 301
           TFV G +++ A  AA      P+  R+ ++Y  VG   FVAS
Sbjct: 196 TFVMGLILVIAVIAATLFPLWPAEMRVGVYYLSVGAGCFVAS 237


>BC012035-1|AAH12035.1|  399|Homo sapiens TLOC1 protein protein.
          Length = 399

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 179 TFV-GYLIIFAGAAAGYIMQTPSHKRIDIFYSLVGVALFVAS 301
           TFV G +++ A  AA      P+  R+ ++Y  VG   FVAS
Sbjct: 196 TFVMGLILVIAVIAATLFPLWPAEMRVGVYYLSVGAGCFVAS 237


>AB024586-1|BAB12685.1|  399|Homo sapiens translocation protein 1
           protein.
          Length = 399

 Score = 30.3 bits (65), Expect = 9.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 179 TFV-GYLIIFAGAAAGYIMQTPSHKRIDIFYSLVGVALFVAS 301
           TFV G +++ A  AA      P+  R+ ++Y  VG   FVAS
Sbjct: 196 TFVMGLILVIAVIAATLFPLWPAEMRVGVYYLSVGAGCFVAS 237


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,444,303
Number of Sequences: 237096
Number of extensions: 1903374
Number of successful extensions: 3632
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3632
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11437206932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)