Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0179
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81043-8|CAB02804.2|  550|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U61237-1|AAB17542.1|  550|Caenorhabditis elegans M89 protein.          29   4.5  
AL023813-2|CAA19424.2|  550|Caenorhabditis elegans Hypothetical ...    29   4.5  

>Z81043-8|CAB02804.2|  550|Caenorhabditis elegans Hypothetical
           protein C29F3.2 protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 223 LHNADSFTQTDRHLLFAGRC 282
           L N +SFT T++HL+FA  C
Sbjct: 400 LENGESFTLTEKHLVFATDC 419


>U61237-1|AAB17542.1|  550|Caenorhabditis elegans M89 protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 223 LHNADSFTQTDRHLLFAGRC 282
           L N +SFT T++HL+FA  C
Sbjct: 400 LENGESFTLTEKHLVFATDC 419


>AL023813-2|CAA19424.2|  550|Caenorhabditis elegans Hypothetical
           protein C29F3.2 protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 223 LHNADSFTQTDRHLLFAGRC 282
           L N +SFT T++HL+FA  C
Sbjct: 400 LENGESFTLTEKHLVFATDC 419


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,683,148
Number of Sequences: 27780
Number of extensions: 303223
Number of successful extensions: 755
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)