Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0178
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.29
07_03_1747 + 29188568-29188715,29188793-29189541 31 0.88
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 1.2
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 2.0
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 4.7
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 4.7
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 4.7
08_02_0813 + 21459776-21461128 28 6.2
07_03_1400 + 26287124-26287298,26287925-26288007,26288141-262882... 28 6.2
01_06_1147 + 34892415-34893702,34894051-34894676 28 6.2
09_04_0031 + 13946692-13946774,13947007-13948012 27 8.2
09_02_0455 + 9517802-9518121,9518177-9518423,9518517-9518804 27 8.2
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 27 8.2
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.29
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 273 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 109
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 0.88
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 326 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 478
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 171 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 287
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 186 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 97
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 58 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 213
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 355 GRGERSPRRWLQPRLAVPRQASTSVPRTP 269
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -3
Query: 300 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 133
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
>08_02_0813 + 21459776-21461128
Length = 450
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 244 GEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQ 423
G++ C WL + R P LL+ TT R V+ W K+ IS P+S++
Sbjct: 238 GDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSIE 289
Query: 424 L 426
L
Sbjct: 290 L 290
>07_03_1400 +
26287124-26287298,26287925-26288007,26288141-26288270,
26288369-26288442,26288797-26288883,26288976-26289100,
26289232-26289292,26289606-26289683,26289785-26289890,
26289978-26290123,26290264-26290380
Length = 393
Score = 27.9 bits (59), Expect = 6.2
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +1
Query: 412 ISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 501
++++ W ND+++C F+ SR +S+ M+
Sbjct: 83 VNLEGGGWCNDVKSCVFRKSSRRGSSNHME 112
>01_06_1147 + 34892415-34893702,34894051-34894676
Length = 637
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +2
Query: 275 PRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPG 385
P N+ G + C LQP PGT S P T+PSPG
Sbjct: 210 PANSFLGNAFLCGFPLQPCPGTAPS-PSPSPTSPSPG 245
>09_04_0031 + 13946692-13946774,13947007-13948012
Length = 362
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 248 NGAAALGWCPRNACGGLTWYC*TR 319
NG AALGW R+ G L+ + TR
Sbjct: 4 NGTAALGWAARDTSGHLSPFSFTR 27
>09_02_0455 + 9517802-9518121,9518177-9518423,9518517-9518804
Length = 284
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -2
Query: 337 PRRWLQPRL--AVPRQASTSVPRTPAKCCSPIPLRSNSVVCR 218
PRRWLQ +L A R A+T P K S + L ++++V R
Sbjct: 108 PRRWLQAKLVAAKNRHATTVAEIPPLK--STVELTNDAIVAR 147
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -2
Query: 352 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPIPLRSNSVVCRSNSFEDLPVSA 185
R RSPRR P R + + R+PA S P+R++S + D+ +A
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADSRSPADHERRDMSTAA 279
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,930,420
Number of Sequences: 37544
Number of extensions: 435266
Number of successful extensions: 1341
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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