Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0178
(578 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF... 28 3.9
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF... 28 3.9
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P... 28 5.2
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P... 28 5.2
At3g63220.2 68416.m07103 kelch repeat-containing F-box family pr... 27 6.8
At3g63220.1 68416.m07102 kelch repeat-containing F-box family pr... 27 6.8
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id... 27 6.8
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id... 27 6.8
>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B
subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 355 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 266
GRG RS R L+P LA+ A + +P P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455
>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B
subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 355 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 266
GRG RS R L+P LA+ A + +P P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455
>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 4 PFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 156
P + C +AA+ E T M+ S L + ++ DS++V LTL +H
Sbjct: 78 PNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVVTALTLLKKH 125
>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 4 PFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 156
P + C +AA+ E T M+ S L + ++ DS++V LTL +H
Sbjct: 78 PNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVVTALTLLKKH 125
>At3g63220.2 68416.m07103 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 352
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 118 SKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAG 246
S +VVN +H+ H + STV++L +++ W K W G
Sbjct: 210 SGLVVNGKVHVLHKGL----STVQVLESVKLGWDVKDYGWPQG 248
>At3g63220.1 68416.m07102 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 345
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 118 SKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAG 246
S +VVN +H+ H + STV++L +++ W K W G
Sbjct: 203 SGLVVNGKVHVLHKGL----STVQVLESVKLGWDVKDYGWPQG 241
>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 273
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 4 PFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 156
P + C +AA+ E T M+ S L + ++ DS+++ LTL +H
Sbjct: 78 PNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVITALTLLKKH 125
>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 267
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 4 PFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRH 156
P + C +AA+ E T M+ S L + ++ DS+++ LTL +H
Sbjct: 78 PNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVITALTLLKKH 125
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,487,095
Number of Sequences: 28952
Number of extensions: 298768
Number of successful extensions: 886
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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