Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0177
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.091
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   2.6  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    25   4.5  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    24   6.0  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    24   7.9  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    24   7.9  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    24   7.9  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.091
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 165 VRVHRANTGRSSNELDRQTTELERR 239
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 168 GLTNVSMSQMQGQVDYDFGVGGGVPIV--RCEERVDHE 61
           G ++ S+S ++ ++DY      G+P+V  +  E VD E
Sbjct: 11  GKSDTSVSSLECEIDYHIEGSDGIPVVEPKISEFVDME 48


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 166 SESTVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDV 297
           S +++R  A  + + +  +L  N G+W   TW  +  R W  DV
Sbjct: 160 SPASLRETAAKEYDALTSKLG-NTGDWIYDTWSDNELRTWLHDV 202


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 154 NIRESESTVRIQADLQMNWIDKRLSW 231
           N  ES S +++Q+D + +  D R++W
Sbjct: 526 NESESNSLLKLQSDFKFSNSDDRVAW 551


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 234 VPTQSFVDPIHLKICLYSHGGL 169
           +P Q+F    H+++C+Y  GG+
Sbjct: 153 IPQQNFT---HVRLCMYPDGGI 171


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +1

Query: 196 LQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLL---NAAATTDGDY 336
           L +N     ++WNAG  G    +  +ER   PD V L   + AA  D D+
Sbjct: 40  LSVNPFYLSVNWNAGAGGALAVIPLNERGKLPDQVNLFRGHTAAVLDTDW 89


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 13  CAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVN 129
           C I     C  A  L  + DSL+  Y+  SP   K V+N
Sbjct: 378 CEIMLPKTCTVAHLLDKLFDSLVLKYNTSSP---KFVIN 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,568
Number of Sequences: 5004
Number of extensions: 28871
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)