Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0177
(354 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 46 7e-06
SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24) 46 1e-05
SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24) 44 4e-05
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3) 41 3e-04
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 41 3e-04
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 40 6e-04
SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24) 40 6e-04
SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002) 37 0.004
SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 36 0.007
SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08) 36 0.007
SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 35 0.017
SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.022
SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.038
SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05) 33 0.067
SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.067
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 31 0.27
SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35) 31 0.27
SB_24860| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.27
SB_14966| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00043) 31 0.27
SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92) 31 0.36
SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 30 0.47
SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8) 30 0.47
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.47
SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.82
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08) 29 0.82
SB_4912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.82
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 29 0.82
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 29 1.1
SB_50088| Best HMM Match : RanGAP1_C (HMM E-Value=0.001) 29 1.4
SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24) 29 1.4
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57) 28 2.5
SB_51422| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_6099| Best HMM Match : UPAR_LY6 (HMM E-Value=0.17) 27 5.8
SB_33929| Best HMM Match : Pkip-1 (HMM E-Value=3) 27 5.8
SB_12530| Best HMM Match : I-set (HMM E-Value=3e-05) 27 5.8
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_38580| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
>SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 541
Score = 46.4 bits (105), Expect = 7e-06
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Frame = +1
Query: 64 MIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 228
++ LL Y +D+ P + + + L + LR ++ E + + I ++ W D L
Sbjct: 35 LLKYLLQNYSKDARPVLNVNDPVQLKLGIMLRQVIDLNERDQILTINVWIRQYWKDHLLK 94
Query: 229 WNAGEWG-CSTWLVSSERLWRPDVVLLNAAAT 321
WN ++G + ++ +R+W+PDV+L N A+T
Sbjct: 95 WNPDDFGGIKSINIAPDRVWKPDVLLYNRAST 126
Score = 44.0 bits (99), Expect = 4e-05
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Frame = +1
Query: 64 MIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 228
+++ L Y +D+ P D + + L + LR ++ E E + ++ W D L
Sbjct: 453 LLNYLFQNYSKDARPVLNVDDPVQLKLGIMLRQVIDLDEREQILTTNVWIRQYWADHFLQ 512
Query: 229 WNAGEW-GCSTWLVSSERLWRPDVVLLN 309
WN ++ G + +++ +++W+PDV+L N
Sbjct: 513 WNPDDFSGIKSIIIAPDKVWKPDVLLFN 540
>SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24)
Length = 478
Score = 45.6 bits (103), Expect = 1e-05
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 202 MNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTDGDY 336
+ W++ LSWNA E+G +T V +RLW PD+VL N A D Y
Sbjct: 77 VKWVNPSLSWNASEFGGVNTLHVEPDRLWVPDIVLYNNACAMDIRY 122
>SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)
Length = 373
Score = 44.0 bits (99), Expect = 4e-05
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Frame = +1
Query: 76 LLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAG 240
L TY++D P D + V L L L ++ + T+ + ++ W D RL WN
Sbjct: 20 LFRTYNKDVLPKETLDKGVPVRLDLALNQIIDVNKRAQTMTVVIWVRQYWRDPRLRWNVS 79
Query: 241 EW-GCSTWLVSSERLWRPDVVLLNAA 315
+ G ++ + RLW PD+ L N A
Sbjct: 80 AYDGVDNIVIKASRLWLPDITLYNNA 105
>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +1
Query: 175 TVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSER--LWRPDVVLLNAA 315
T+R+Q ++ W D +L W+ ++G +V ER +W PDVVLLN A
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLNNA 80
>SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3)
Length = 79
Score = 40.7 bits (91), Expect = 3e-04
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 175 TVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSER--LWRPDVVLLN 309
T+R+Q ++ W D +L W+ ++G +V ER +W PDVVLLN
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLN 78
>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 716
Score = 40.7 bits (91), Expect = 3e-04
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = +1
Query: 163 ESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-NAAATTDGD- 333
E +++ ++ W + LSWNA E+ G S + ++LW+PD+ L NA ++ DG
Sbjct: 104 EKYELLKLSLYVRQIWKNPLLSWNASEYGGISQVNLEPDQLWKPDIYLYNNADSSADGSL 163
Query: 334 YALRARV 354
Y +A++
Sbjct: 164 YGFKAKI 170
>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
Length = 342
Score = 39.9 bits (89), Expect = 6e-04
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 130 LTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL 306
LTL+ H ++E ++ L+ W D RL+WN E+ G + S+ +W PD+ +L
Sbjct: 22 LTLYDFHTQDEKNE-VIQTFLILEQMWNDTRLAWNETEYGGIKQMTLRSKLIWTPDISVL 80
Query: 307 NAA 315
N+A
Sbjct: 81 NSA 83
>SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)
Length = 445
Score = 39.9 bits (89), Expect = 6e-04
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 196 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTD 327
+ + W + LSWNA E+G S VS +R W PD++L N+ D
Sbjct: 21 IAVRWTNPDLSWNASEYGGVSQIYVSPKRPWTPDILLYNSVRFVD 65
>SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002)
Length = 123
Score = 37.1 bits (82), Expect = 0.004
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Frame = +1
Query: 40 ENATSLSLMIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIR---ESESTVRIQADLQM 204
++ L L+ D Y+++ P D + V + + + + E + + ++M
Sbjct: 27 QDDNELRLIKDLFFRGYNKNVRPVEDKSMPVEVKFGIAYTQVVDLIEKDQVLISNIWVRM 86
Query: 205 NWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 309
NW + L WNA E+G L +S +W PD+VL N
Sbjct: 87 NWNNHLLRWNASEYGGIDKLNISPTLMWLPDIVLHN 122
>SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 548
Score = 36.3 bits (80), Expect = 0.007
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 139 HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 315
HLR + V + ++ W + L+WN ++ G + ++ ++W PD++L N A
Sbjct: 106 HLRFDISEQQAQLVTVSVWIRQKWTNPMLAWNTSKYGGIESVNLNPAKVWIPDIILYNNA 165
Query: 316 ATT 324
T
Sbjct: 166 DET 168
>SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08)
Length = 362
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 196 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 315
+ + W D RL WN ++G +++ S +LW PD+ L N A
Sbjct: 276 IDLYWTDFRLRWNHTKYGGIKSFVTPSRQLWLPDITLYNNA 316
>SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 422
Score = 35.1 bits (77), Expect = 0.017
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 196 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAAT 321
+++ W D L+WN ++G + V +W+PD++L N A+T
Sbjct: 26 IRLYWKDHLLNWNPEDFGGVKSINVEPNNVWKPDILLYNPAST 68
>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 930
Score = 34.7 bits (76), Expect = 0.022
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 157 IRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 315
+ E L+M W D L WN ++G T + + + +W P V++ N A
Sbjct: 534 VEEKNMVFTTNVRLRMGWKDAFLQWNPADYGGVTQINLEASDIWTPPVIIYNQA 587
>SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 33.9 bits (74), Expect = 0.038
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 178 VRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTDG 330
V + + + W + L+W+ +G T + V R+WRPD++L NA TDG
Sbjct: 69 VSLHQIIDLKWNNPLLTWDPTHFGNLTSINVDPLRVWRPDLILYNNADRDTDG 121
>SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05)
Length = 191
Score = 33.1 bits (72), Expect = 0.067
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 115 KIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRP 291
K +V LH + A + S S VR+ +++ W + L WN ++ G T V+ +W P
Sbjct: 69 KRIVRPVLHPQDA-VNVSFS-VRLNKLVEVKWENPFLVWNESDYGGVHTLHVTFNDVWVP 126
Query: 292 DVVLLN 309
D+VL N
Sbjct: 127 DIVLYN 132
>SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 33.1 bits (72), Expect = 0.067
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 148 HANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 309
H + + TV L W D L+WN ++ G + V +W PD+VL N
Sbjct: 199 HQQLMGAPVTVACFLPLLQKWYDPWLTWNESDFGGMKSIKVDPSCVWVPDIVLYN 253
>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 275
Score = 31.1 bits (67), Expect = 0.27
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 196 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTDGD-YALRARV 354
+ + W + ++WN E+G + + LW+PD+ L NA + DG Y A++
Sbjct: 44 MDVKWENPLVAWNKSEYGGIVQVNLDPSTLWKPDIYLYNNADSGYDGSLYGFTAKI 99
>SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35)
Length = 479
Score = 31.1 bits (67), Expect = 0.27
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 208 WIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTDG 330
W + L WN +G + VS ++W PD+VL NA A+TDG
Sbjct: 40 WYNPFLRWNETFYGGIKEINVSPLQVWTPDLVLYNNADASTDG 82
>SB_24860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 31.1 bits (67), Expect = 0.27
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = +1
Query: 88 YDRDSPP--DSKIVVNLTLHLRHANI-RESESTVRIQADLQM--NWIDKRLSWNAGEWGC 252
YD+ P D+ V L + + N R E + + L M NW D RL+ N +
Sbjct: 14 YDKTERPGVDTGKPVELGVDIHFDNFGRIEEMNMEVDVFLYMRYNWKDPRLA-NFTDKTI 72
Query: 253 STWLVSSERLWRPDVVLLNAAATTDGD 333
+ E++WRPD NA A +D D
Sbjct: 73 TFTRGDIEKVWRPDTYCSNAHAYSDVD 99
>SB_14966| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00043)
Length = 137
Score = 31.1 bits (67), Expect = 0.27
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = +1
Query: 88 YDRDSPP--DSKIVVNLTLHLRHANI-RESESTVRIQADLQM--NWIDKRLSWNAGEWGC 252
YD+ P D+ V L + + N R E + + L M NW D RL+ N +
Sbjct: 14 YDKTERPGVDTGKPVELGVDIHFDNFGRIEEMNMEVDVFLYMRYNWKDPRLA-NFTDKTI 72
Query: 253 STWLVSSERLWRPDVVLLNAAATTDGD 333
+ E++WRPD NA A +D D
Sbjct: 73 TFTRGDIEKVWRPDTYCSNAHAYSDVD 99
>SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92)
Length = 88
Score = 30.7 bits (66), Expect = 0.36
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 208 WIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVL 303
W + L+WN E+G T VS +W PD+VL
Sbjct: 53 WYNPLLTWNVTEYGGLKTINVSPTIIWLPDIVL 85
>SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 434
Score = 30.3 bits (65), Expect = 0.47
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 199 QMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 309
+ W D L W+ + G T + V LW+PD+VL N
Sbjct: 88 RQTWTDAWLKWDPAKHGGITAINVDPSFLWKPDMVLYN 125
>SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8)
Length = 156
Score = 30.3 bits (65), Expect = 0.47
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 208 WIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 309
W ++ L+W+ E+G ST V+ +++W PD+ L N
Sbjct: 2 WRNEYLTWDPKEFGGISTINVNVDKVWVPDIYLYN 36
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 30.3 bits (65), Expect = 0.47
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 196 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVL 303
+ + W++ L+W+ +G T + V+ +W+PD+VL
Sbjct: 64 INLRWVNPFLTWDPKMYGGLTSINVNPNMIWKPDIVL 100
>SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 29.5 bits (63), Expect = 0.82
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 208 WIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 309
W D L W+ ++ S + +W PDV L+N
Sbjct: 404 WKDPSLQWDKAKYNLHKTRFSPKEIWVPDVSLIN 437
>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
Length = 428
Score = 29.5 bits (63), Expect = 0.82
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +1
Query: 145 RHANIRESEST-VRIQADLQMNWIDKRLSWNAG-EWGCSTWLVSSERLWRPDVVLLN 309
R+++ ++S++ + + W D L WN G V +W PD+ L+N
Sbjct: 10 RYSSCQDSKAQELTTNLRIYQEWKDPNLKWNKSIAQGVEEIFVDPSDIWTPDIALMN 66
>SB_4912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 29.5 bits (63), Expect = 0.82
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -1
Query: 180 HGGLGLTNVSMSQMQGQVDYDFGVGGGV 97
HG LG S+S + G+++ D+GVGGGV
Sbjct: 91 HGHLG----SVSMIMGKMNNDYGVGGGV 114
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 29.5 bits (63), Expect = 0.82
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -1
Query: 180 HGGLGLTNVSMSQMQGQVDYDFGVGGGV 97
HG LG S+S + G+++ D+GVGGGV
Sbjct: 358 HGHLG----SVSMIMGKMNNDYGVGGGV 381
>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 506
Score = 29.1 bits (62), Expect = 1.1
Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 196 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 315
+ + W ++ L+W+ + G T + ++ +W PD+VL ++A
Sbjct: 45 VNVRWDNELLTWHPSNYEGVQTVRLDAKSVWIPDIVLYDSA 85
>SB_50088| Best HMM Match : RanGAP1_C (HMM E-Value=0.001)
Length = 636
Score = 28.7 bits (61), Expect = 1.4
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 196 LQMNW--IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAATTD 327
L +NW K +SW ++ + VS E RP VVLL A TD
Sbjct: 245 LPVNWKFSRKTMSWTPDDFAQLIFRVSKEYNSRPKVVLLLVDAATD 290
>SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24)
Length = 540
Score = 28.7 bits (61), Expect = 1.4
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = +3
Query: 39 RKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNELDRQ 218
R+ N H R A + SG P R SQ T HS VR R N G S+ DR+
Sbjct: 425 RQTNPARNHHRSASVSNMSGPPRRGTGASQVGRP-RTSTHSDVRESRDNPGMKSDSRDRE 483
Query: 219 TTELE 233
+ + E
Sbjct: 484 SRDSE 488
>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 181 RIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 309
+++ + + W + L+W+ ++G + V+ E +W PD+V+ N
Sbjct: 1463 KLKQIVDLQWENPILTWDPRDYGGVQEINVAPEEVWVPDIVIYN 1506
>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 165 LTNVSMSQMQGQVDYDFGVGGGVPIVRCEERVDHE 61
L+++S +G VD FGV +R +++D+E
Sbjct: 594 LSHISGGDKEGDVDLHFGVNSQTGAIRLNKKLDYE 628
>SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)
Length = 818
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -3
Query: 307 LAVPRQASTSVPRTPAKCCSPTPLRSNSV 221
L++P A++S P TPA SPTP SNS+
Sbjct: 680 LSLPCTAASS-PSTPASSPSPTPPLSNSL 707
>SB_51422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 346 RGERSPRRW--LQPRLAVPRQASTSVPRTPAKCCSPT 242
R + +P W ++ R++ P+ + SVP T SPT
Sbjct: 84 RAQTNPESWKPIRKRMSAPKGSLNSVPETSEVSSSPT 120
>SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1352
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 262 AKCCSPTPLRSNSVVCRSNSFEDLPVF 182
++C P+R VCR N F DL F
Sbjct: 1223 SECLEELPIREAVKVCRHNCFNDLIAF 1249
>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 942
Score = 27.1 bits (57), Expect = 4.4
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -3
Query: 352 HGRGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNSVVCRSNSFE 197
H R + R+ L+ + PR S+ T K SP+ R S RS S E
Sbjct: 288 HSRSKSKERKTLKSPIRSPRGQSSRERNTKRKSKSPSLERRRSRARRSRSIE 339
>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1743
Score = 26.6 bits (56), Expect = 5.8
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 91 DRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL 264
D D+ D + ++ L L ++R S+S + W+ KR+ GE G S +L
Sbjct: 1382 DHDNQADEQKLMRLIFKLSELSLRLSKSCKGYSRSNDLRWLTKRV-LEMGEQGFSFFL 1438
>SB_6099| Best HMM Match : UPAR_LY6 (HMM E-Value=0.17)
Length = 230
Score = 26.6 bits (56), Expect = 5.8
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -2
Query: 188 CIRTVDSDSRMLACLKCRVRLTTILESGGESRSYVARSESI---MRDSDVA 45
C+R S R + L R+ +++ L SGGES + ++ + DSD A
Sbjct: 157 CLRDKKSTMRGASFLDVRLAISSTLTSGGESELFYPTNDELRGTKHDSDDA 207
>SB_33929| Best HMM Match : Pkip-1 (HMM E-Value=3)
Length = 321
Score = 26.6 bits (56), Expect = 5.8
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 91 DRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL 264
D D+ D + ++ L L ++R S+S + W+ KR+ GE G S +L
Sbjct: 10 DHDNQADEQKLMRLIFKLSEHSLRMSKSCKGYSRSNDLRWLTKRV-LEMGEQGFSFFL 66
>SB_12530| Best HMM Match : I-set (HMM E-Value=3e-05)
Length = 127
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 27 CGRMRKRNITVPHDRLAPRNVRSGLPP 107
C + R+ T+ R+ PR V G+PP
Sbjct: 86 CAQEVTRSFTITAKRIGPRRVPCGIPP 112
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 26.2 bits (55), Expect = 7.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 286 STSVPRTPAKCCSPTPLRSNSVVCRSNS 203
S+ P PA+CC+ PL + C +S
Sbjct: 1650 SSCKPDCPARCCTTEPLSACPATCSPDS 1677
>SB_38580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 990
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 91 DRDSPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKR 222
D ++ PD N +H IRE ++T ++ D N I+K+
Sbjct: 16 DGETSPDQGKSDNNAKKRKHETIREVDNTDHVKTDKDNNKIEKK 59
>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1455
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -1
Query: 288 PPQAFRGHQPSAAAPLPCV--PTQSFV 214
PPQ F+G Q + PLP + P Q F+
Sbjct: 836 PPQMFQGRQMAGKHPLPSMGSPIQGFM 862
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,034,959
Number of Sequences: 59808
Number of extensions: 252477
Number of successful extensions: 922
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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