Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0177
(354 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF... 28 1.6
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF... 28 1.6
At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr... 28 2.1
At3g24540.1 68416.m03082 protein kinase family protein contains ... 28 2.1
At3g49290.1 68416.m05387 expressed protein 27 3.6
At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains P... 27 4.7
At5g55020.1 68418.m06853 myb family transcription factor (MYB120... 26 6.3
At5g23150.1 68418.m02707 PWWP domain-containing protein identica... 26 6.3
At1g52160.1 68414.m05887 metallo-beta-lactamase family protein 26 6.3
At5g60580.3 68418.m07597 zinc finger (C3HC4-type RING finger) fa... 26 8.3
At5g60580.2 68418.m07596 zinc finger (C3HC4-type RING finger) fa... 26 8.3
At5g60580.1 68418.m07595 zinc finger (C3HC4-type RING finger) fa... 26 8.3
At4g16150.1 68417.m02450 calmodulin-binding protein similar to a... 26 8.3
At4g15140.1 68417.m02325 expressed protein 26 8.3
At3g52250.1 68416.m05742 myb family transcription factor contain... 26 8.3
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 26 8.3
At1g48470.1 68414.m05418 glutamine synthetase, putative similar ... 26 8.3
>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B
subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 349 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 260
GRG RS R L+P LA+ A + +P P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455
>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B
subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 349 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 260
GRG RS R L+P LA+ A + +P P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455
>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
protein similar to A. thaliana putative protein
F6I18.110, GenBank accession number 2980768
Length = 310
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 171 LGLTNVSMSQMQGQVDYDFGVGGGVPIVRCEERVDHEG 58
LGL N S S G D G+GGG P + + EG
Sbjct: 24 LGLPNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEG 61
>At3g24540.1 68416.m03082 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 509
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 78 PRNVRSGLPPRLQNRSQPDPA 140
PR+ + PPRL NR+ P PA
Sbjct: 75 PRSPSTSTPPRLGNRNPPPPA 95
>At3g49290.1 68416.m05387 expressed protein
Length = 312
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 307 LAVPRQASTSVPRTPAKCCSPTPLRSNSVVCRSNS 203
+A + AS S P TP+K S TP+R S RS S
Sbjct: 231 VATRKSASISRPTTPSKSRSITPIRYPSEPRRSAS 265
>At1g06560.1 68414.m00695 NOL1/NOP2/sun family protein contains Pfam
profile PF01189: NOL1/NOP2/sun family
Length = 599
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 188 CIRTVDSDSRMLACLKCRVRLTTILESGGESRSYVARSE 72
CI T D+ CL + +TIL +G S S + SE
Sbjct: 348 CITTCKLDALKSVCLPTTLNESTILINGDNSSSMTSHSE 386
>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 523
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -3
Query: 286 STSVPRTPAKCCS---PTPLRSNSVVCRSNSFEDLPVFA 179
S P TP++ S P PL S R+N + LP+FA
Sbjct: 220 SPHTPNTPSQLSSTPPPPPLSSPLCSPRNNQYPTLPLFA 258
>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
cDNA putative transcription factor (HUA2) GI:4868119;
contains Pfam profile PF00855: PWWP domain
Length = 1392
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 291 RPPQAFRGHQPSAAAPLPCVP 229
RPP +QPSAA+ L VP
Sbjct: 1346 RPPSGTMNYQPSAASNLQAVP 1366
>At1g52160.1 68414.m05887 metallo-beta-lactamase family protein
Length = 890
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = -2
Query: 182 RTVDSDSRMLACLKCRVRLTTILESGGESRSYV----ARSESIMRDSDVAFSHSAAL 24
R D D L C LESGGE+ + + +S+ + SD++ +S+ L
Sbjct: 649 RLEDLDMEFLDCRSTTATSWASLESGGEAEGSLFTQGSPMQSVFKRSDISMDNSSVL 705
>At5g60580.3 68418.m07597 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 487
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -3
Query: 346 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNSVVCRSNSFEDL 191
RG+ S + L P+ ++T + + CSP + + + RS S L
Sbjct: 100 RGKSSLKNLLPKAGCKPKTSNTDIEKGQGNACSPPASQEKASISRSLSLSKL 151
>At5g60580.2 68418.m07596 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 494
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -3
Query: 346 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNSVVCRSNSFEDL 191
RG+ S + L P+ ++T + + CSP + + + RS S L
Sbjct: 100 RGKSSLKNLLPKAGCKPKTSNTDIEKGQGNACSPPASQEKASISRSLSLSKL 151
>At5g60580.1 68418.m07595 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 487
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -3
Query: 346 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNSVVCRSNSFEDL 191
RG+ S + L P+ ++T + + CSP + + + RS S L
Sbjct: 100 RGKSSLKNLLPKAGCKPKTSNTDIEKGQGNACSPPASQEKASISRSLSLSKL 151
>At4g16150.1 68417.m02450 calmodulin-binding protein similar to
anther ethylene-upregulated calmodulin-binding protein
ER1 GI:11612392 from [Nicotiana tabacum]
Length = 906
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 210 DRQTTELERRGVGLQHLAGVLG 275
+R T E + +G+G+ HL VLG
Sbjct: 565 NRNTKEYDSKGLGVIHLCAVLG 586
>At4g15140.1 68417.m02325 expressed protein
Length = 138
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 292 QASTSVPRTPAKCCSPTPLRSNSVVCRSNSFEDLPV 185
Q+S P P SP+ L S+S VCR+ + V
Sbjct: 52 QSSLWSPLLPRNYASPSDLDSDSCVCRNLKLREFQV 87
>At3g52250.1 68416.m05742 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 1677
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 205 NWIDKRLSWNAGEWGCSTWLVSS 273
N D R+S + EW C+TW +S+
Sbjct: 126 NCRDDRVSVSQKEWKCNTWEMSN 148
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 303 QYHVRPPQAFRGHQPSAAAPLPC 235
QY + P++ RG QP+A LPC
Sbjct: 281 QYR-KGPESLRGTQPTAMLKLPC 302
>At1g48470.1 68414.m05418 glutamine synthetase, putative similar to
glutamine synthetase, cytosolic isozyme (glutamate--
ammonia ligase, GS1) [Arabidopsis thaliana]
SWISS-PROT:Q9LVI8
Length = 353
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -1
Query: 204 HLKICLYSHGGLGLTN--VSMSQMQGQVDYDFGVGGG 100
H K CLYS +G N V Q + Q+ G+G G
Sbjct: 175 HYKACLYSGLSIGGANGEVMPGQWEFQISPTVGIGAG 211
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,244,183
Number of Sequences: 28952
Number of extensions: 174155
Number of successful extensions: 620
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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