Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0173
         (376 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-12|CAN99725.1|  141|Caenorhabditis elegans Hypothetical p...    30   0.62 
AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical ...    29   0.82 
Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    28   1.9  
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    28   1.9  
AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical ...    27   3.3  
AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    27   4.4  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z83232-4|CAB05756.2|  891|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U67953-4|AAL13329.1|  732|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AC024843-8|AAM48560.1|  726|Caenorhabditis elegans Hypothetical ...    27   5.8  
AC024843-7|AAF60843.2|  743|Caenorhabditis elegans Hypothetical ...    27   5.8  
AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical ...    27   5.8  
AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical ...    27   5.8  
Z70756-6|CAA94792.1|  290|Caenorhabditis elegans Hypothetical pr...    26   7.6  
U12966-7|AAK84534.1|  352|Caenorhabditis elegans Dumpy : shorter...    26   7.6  

>Z75547-12|CAN99725.1|  141|Caenorhabditis elegans Hypothetical
           protein K10C8.3b protein.
          Length = 141

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = -2

Query: 348 RAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHH 172
           R  S+ ++  +  +RP + R ++ P P       R RS +   + K +  V     P+H
Sbjct: 17  RKKSKSVKRCSSCKRPNSTRRSKTPDPNSEKEKVRNRSGSSSKKEKKNSLVNPNLQPNH 75


>AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.4 protein.
          Length = 466

 Score = 29.5 bits (63), Expect = 0.82
 Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -1

Query: 376 PRRAP-LRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDA 227
           PRR P LR   S  Q H  H R P   HS  +      R E   P AL+ A
Sbjct: 304 PRRLPPLRPPPSSLQHHHHHRRSPPLFHSPVYKPKPRSRTES--PAALKAA 352


>Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical
           protein W08E3.1 protein.
          Length = 160

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 307 PGLCGGPDVPAHGSAPPGGVPGG 375
           PG  G P +P     PPGG PGG
Sbjct: 109 PGGRGMPAMPGMPGMPPGGAPGG 131


>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
           protein Y47D3B.7 protein.
          Length = 1113

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -1

Query: 331 HQDHHRGPAPRHSEKHSASEA-DRAERLLPGALRDAPSPE*TFSTCLVSTESTPFP 167
           +  HH+ P P H   H   +  +  E++   ++ DAP    T  T LV  +S   P
Sbjct: 220 YSQHHQSPPPHHHHHHPMPKIHENPEQVASPSIEDAPE---TKPTHLVEPQSPKSP 272


>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
           protein Y32B12B.4 protein.
          Length = 1528

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -1

Query: 376 PRRAPLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 215
           P  A LR  +  +      H GP     E+H  +E D  E LL G L D P  +
Sbjct: 239 PPEAWLRDDKDVQSTSAASHSGPVAMKMEEHEETEEDFLE-LLNGTLDDVPDSD 291


>AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical
           protein ZK973.9 protein.
          Length = 233

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
 Frame = +1

Query: 319 GGPDVPAHGSAPP---GGVP 369
           GGP  P HG APP   GGVP
Sbjct: 133 GGPMQPPHGFAPPPMGGGVP 152



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
 Frame = +1

Query: 307 PGLCGGPDVPAH---GSAPPGGVPG 372
           PG  GGP  P H   G  PPG  PG
Sbjct: 206 PGYPGGPPPPPHGYEGYPPPGAQPG 230


>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +1

Query: 292 RCAWAPGLCGGPDVPAHGSAPPG-GVPGG 375
           R +  PG  GGP  P     P G G PGG
Sbjct: 28  RYSGGPGTPGGPGTPGGPGTPGGPGTPGG 56



 Score = 26.2 bits (55), Expect = 7.6
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
 Frame = +1

Query: 277 TPSVSRCAWAPGLCGGPDVPAHGSAPPG-GVPGG 375
           TP        PG  GGP  P     P G G PGG
Sbjct: 35  TPGGPGTPGGPGTPGGPGTPGGLGTPGGPGTPGG 68


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 324 TTTEARRPGTARNTRRPKPTELSVCCRERSETP 226
           TTT  +RP T   T  P+P E     +E++E P
Sbjct: 163 TTTTTKRPPTTTTTEDPQPFEFHE-LQEQAENP 194


>Z83232-4|CAB05756.2|  891|Caenorhabditis elegans Hypothetical
           protein K04B12.3 protein.
          Length = 891

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -2

Query: 327 RTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSR 202
           R  T A+RPG  R   R K +E  V  R + E      KP +
Sbjct: 352 RLYTNAQRPGERRGADRFKDSEKPVKIRSKEEHLMRVEKPKK 393


>U67953-4|AAL13329.1|  732|Caenorhabditis elegans Hypothetical
           protein ZC13.3 protein.
          Length = 732

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 306 RPGTARNTRRPKPTEL 259
           RP T + T++PKPTE+
Sbjct: 189 RPWTVKQTKKPKPTEV 204


>AC024843-8|AAM48560.1|  726|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.3c protein.
          Length = 726

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 376 PRRAPLRAVQSREQGHQDHHRGPAPRHSEKHS 281
           PR+      +SR++G +DH +  A R S++ S
Sbjct: 137 PRQRRSSRSRSRDRGDKDHRKPAASRRSDRES 168


>AC024843-7|AAF60843.2|  743|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.3a protein.
          Length = 743

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 376 PRRAPLRAVQSREQGHQDHHRGPAPRHSEKHS 281
           PR+      +SR++G +DH +  A R S++ S
Sbjct: 137 PRQRRSSRSRSRDRGDKDHRKPAASRRSDRES 168


>AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.3b protein.
          Length = 525

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 376 PRRAPLRAVQSREQGHQDHHRGPAPRHSEKHS 281
           PR+      +SR++G +DH +  A R S++ S
Sbjct: 139 PRQRRSSRSRSRDRGDKDHRKPAASRRSDRES 170


>AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical
           protein Y41G9A.6 protein.
          Length = 524

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -2

Query: 324 TTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHHF 169
           T+TE   P     + RP  T+L+V     ++TP H N+P  P  ++ SP  F
Sbjct: 263 TSTETSSPFFLDQSVRP--TQLAVASSFPAQTPLH-NEPLPPPVTQNSPSIF 311


>Z70756-6|CAA94792.1|  290|Caenorhabditis elegans Hypothetical
           protein T06E4.6 protein.
          Length = 290

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
 Frame = +1

Query: 298 AWAPGLCGGPDVPAHGSAP--PG--GVPGG 375
           A APG  GGP  P     P  PG  G PGG
Sbjct: 231 AGAPGAPGGPGQPGQDGQPGAPGNDGAPGG 260


>U12966-7|AAK84534.1|  352|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 17 protein.
          Length = 352

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 310 GLCGGPDVPAHGSAPPGGVPGG 375
           G   GP  P+  S P GG PGG
Sbjct: 74  GYGSGPSGPSGPSGPHGGFPGG 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,917,259
Number of Sequences: 27780
Number of extensions: 182155
Number of successful extensions: 806
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)