Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0173
(376 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g12450.1 68417.m01970 expressed protein 33 0.062
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 31 0.25
At1g27060.1 68414.m03299 regulator of chromosome condensation (R... 29 1.0
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 27 3.1
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 27 4.1
At2g07630.1 68415.m00881 hypothetical protein 27 4.1
At5g53440.1 68418.m06641 expressed protein 27 5.4
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P... 27 5.4
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 27 5.4
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to... 27 5.4
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 27 5.4
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 27 5.4
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 26 7.1
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 26 7.1
At4g09060.1 68417.m01493 expressed protein 26 7.1
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 26 7.1
At2g40070.1 68415.m04923 expressed protein 24 7.8
At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to hi... 26 9.4
At4g18160.1 68417.m02698 outward rectifying potassium channel, p... 26 9.4
At4g11610.1 68417.m01859 C2 domain-containing protein contains I... 26 9.4
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 26 9.4
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 26 9.4
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 26 9.4
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 26 9.4
>At4g12450.1 68417.m01970 expressed protein
Length = 277
Score = 33.1 bits (72), Expect = 0.062
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -2
Query: 363 PSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRR 184
PS CR RD+ T +PGT + +P P+ +C R E + + P+R S R
Sbjct: 32 PSYSCRKNVRDVVNT----QPGTVKKNPKPDPSLRRLCSSRRPELDSNSHHPTRRSVSAR 87
Query: 183 S 181
+
Sbjct: 88 A 88
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 31.1 bits (67), Expect = 0.25
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 304 APGLCGGPDVPAHGSAPPGGVP 369
APG G P P HG PP G P
Sbjct: 73 APGYGGYPPAPGHGGYPPAGYP 94
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 304 APGLCGGPDVPAHGSAPPGGVPGG 375
APG G P P +G PP GG
Sbjct: 64 APGYGGYPPAPGYGGYPPAPGHGG 87
>At1g27060.1 68414.m03299 regulator of chromosome condensation
(RCC1) family protein low similiarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 386
Score = 29.1 bits (62), Expect = 1.0
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 298 AWAPGLCGGPDVPAHGSAP 354
+W G CGGPDV A S P
Sbjct: 229 SWGRGFCGGPDVHAPQSLP 247
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 27.5 bits (58), Expect = 3.1
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = -2
Query: 369 GHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWS 190
GH + CR R +++R R R P S R RS P R PS P
Sbjct: 108 GHFARECRNRGGTGRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPAR 167
Query: 189 RRS 181
RS
Sbjct: 168 GRS 170
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 334 GHQDHHRGPAPRHSEKHSASEADRAERLL 248
GH DH G HS H S +RAE+LL
Sbjct: 157 GH-DHGHGHDHGHSHDHGHSYGERAEQLL 184
>At2g07630.1 68415.m00881 hypothetical protein
Length = 458
Score = 27.1 bits (57), Expect = 4.1
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 126 QQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSA-LSASDAECFS 293
Q L C + +K Y + DS++ + YS + + + P SKRS+ S S A+ FS
Sbjct: 369 QYLVCVENENKRYQMH--DSIDQCSLMLTYSEEPSEATTPSSKRSSDTSISPADNFS 423
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1
Query: 358 RAVQSREQGHQDHHRGPAPRHSEKHSASEADRAE 257
R+++ E GH+++ R + E+H E +AE
Sbjct: 550 RSIEVEETGHRNNARDYSATEEERHLVDETSQAE 583
>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28270, At2g05450,
At1g45090, At2g16180, At2g06750
Length = 1224
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 316 RGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 215
R P+P H +H + E+LLP + P+ E
Sbjct: 681 RVPSPSHQPEHGIPDGGNFEQLLPDPILSDPALE 714
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 26.6 bits (56), Expect = 5.4
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -2
Query: 315 EARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHHFHCSI 157
E +R + R P S +ER+ P+ ++ +R RR HH SI
Sbjct: 418 ERKRALEIKRDRTPTARATSKDTKERTPVPKSISRDARSSSLRRDAHHREASI 470
>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1210
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 316 RGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 215
R P+P H +H + E+LLP + P+ E
Sbjct: 672 RVPSPSHQPEHGIPDGGNFEQLLPDPILSDPALE 705
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 26.6 bits (56), Expect = 5.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 373 RRAPLRAVQSREQGHQDHHRGPAPRHSEKHSAS 275
RR+P ++ SR G + R P+PR S S S
Sbjct: 242 RRSPAKST-SRSPGPRSKSRSPSPRRSRSRSRS 273
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 26.6 bits (56), Expect = 5.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 373 RRAPLRAVQSREQGHQDHHRGPAPRHSEKHSAS 275
RR+P ++ SR G + R P+PR S S S
Sbjct: 242 RRSPAKST-SRSPGPRSKSRSPSPRRSRSRSRS 273
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 26.2 bits (55), Expect = 7.1
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = -2
Query: 369 GHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCR--ERSETPRHRNKPSRPV 196
G R+ SR + + R P ++ + E+S R ERS +PR P P
Sbjct: 199 GRYDNESRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPA 258
Query: 195 WSRRSP 178
+ SP
Sbjct: 259 LQKASP 264
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 26.2 bits (55), Expect = 7.1
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = -2
Query: 369 GHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCR--ERSETPRHRNKPSRPV 196
G R+ SR + + R P ++ + E+S R ERS +PR P P
Sbjct: 199 GRYDNESRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPA 258
Query: 195 WSRRSP 178
+ SP
Sbjct: 259 LQKASP 264
>At4g09060.1 68417.m01493 expressed protein
Length = 341
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -2
Query: 309 RRPGTARNTRRPKPTELSVCCRERSE--TPRHRNKPSRPVWS 190
R +A++ +R P +S +R E +P KP PVW+
Sbjct: 290 RNSASAKSNKRKSPKTMSSPVEKRLEFSSPEISRKPLSPVWN 331
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -1
Query: 376 PRRAPLRAVQSREQGHQDHHRGPAP 302
P AP R+ H+ HH PAP
Sbjct: 166 PAPAPAPTKHKRKHKHKRHHHAPAP 190
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 23.8 bits (49), Expect(2) = 7.8
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Frame = +1
Query: 319 GGPDVPAH--GSAPPGGVPGG 375
G P P+ GS PGG PGG
Sbjct: 401 GRPGAPSSRSGSVEPGGPPGG 421
Score = 20.6 bits (41), Expect(2) = 7.8
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +1
Query: 244 PAANAQLCRLRTPSVSRCAWAP 309
P+ N L R +P+V W P
Sbjct: 352 PSKNPALSRAASPTVRSRPWKP 373
>At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to
histidine kinase AHK2 [Arabidopsis thaliana]
gi|13537196|dbj|BAB40774
Length = 1176
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 132 LNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPG 248
+ SS S+ Y G G+ +K++ ++ G+ +S PG
Sbjct: 816 MQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPG 854
>At4g18160.1 68417.m02698 outward rectifying potassium channel,
putative (KCO6) similar to kco1 [Arabidopsis thaliana]
gi|2230761|emb|CAA69158; member of the 2 pore, 4
transmembrane (2P/4TM) K+ channel family, PMID:11500563
Length = 436
Score = 25.8 bits (54), Expect = 9.4
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 254 TLSSVGFGRRVFLAVPGRR-ASVVVLMSLL 340
++++VG+G R F +PGR A++ +L+S L
Sbjct: 310 SVTTVGYGDRAFKTLPGRLFAAIWLLVSTL 339
>At4g11610.1 68417.m01859 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1011
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/36 (25%), Positives = 17/36 (47%)
Frame = -1
Query: 355 AVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLL 248
++ + + H +HH P+H SE R +L+
Sbjct: 193 SLAAEQDNHNEHHHHYVPKHQVDEMRSEPARPSKLV 228
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 25.8 bits (54), Expect = 9.4
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Frame = +1
Query: 280 PSVSRCAWAPGLCGGPDVPAHG----SAPPGGVPGG 375
P R + P + GG P G S PPGGVP G
Sbjct: 124 PFGGRPSTGPLVGGGSSFPQPGGFPASGPPGGVPSG 159
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 246 RERSETPRHRNKPSRPVWSRRSPHH 172
R RS +P +R +PS RRSP +
Sbjct: 154 RRRSPSPVYRRRPSPDYTRRRSPEY 178
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 246 RERSETPRHRNKPSRPVWSRRSPHH 172
R RS +P +R +PS RRSP +
Sbjct: 180 RRRSPSPVYRRRPSPDYTRRRSPEY 204
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = -2
Query: 309 RRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHH 172
RR + R P+ R ETPR WSR+ HH
Sbjct: 300 RREASNELNRTPRKQVQKKSALLRLETPRSYKNSRENEWSRQHNHH 345
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,467,687
Number of Sequences: 28952
Number of extensions: 164953
Number of successful extensions: 635
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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