Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0169
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   2.7  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   3.6  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   8.3  

>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 483 MWYQYHIVPGEADLVNPFA 539
           MWY+ H +P E D  NP A
Sbjct: 241 MWYRRHYLPNEKDWSNPEA 259


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = -2

Query: 610 SRSDFVNDVPSSYHKTKEIQQ 548
           SR+ F+ ++PSSYH+ KEI++
Sbjct: 298 SRNVFIGNLPSSYHE-KEIEE 317


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 199 SFSLGRKKSANST*QKRFDALRVQLNN 119
           SFS+ R+  A S+     D   VQLNN
Sbjct: 108 SFSINREACATSSITSLMDTFNVQLNN 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,193
Number of Sequences: 5004
Number of extensions: 52696
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)