Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0169
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36893| Best HMM Match : Fibrinogen_C (HMM E-Value=2.4e-24)          29   5.0  
SB_26857| Best HMM Match : Viral_NABP (HMM E-Value=2.6)                28   8.8  
SB_58520| Best HMM Match : RVT_1 (HMM E-Value=0.035)                   28   8.8  

>SB_36893| Best HMM Match : Fibrinogen_C (HMM E-Value=2.4e-24)
          Length = 411

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 622 TRFNSRSDFVNDVPSSYHKTKEIQQ*SQAKGFTRSASPGTMWY*YHIL 479
           TR     +FVND  S+YH T+ I +    +G  R+ +P  +   YH +
Sbjct: 56  TRLQHPHNFVNDTESTYHGTEVIIR--TREGRMRTRTPSGLVLSYHAI 101


>SB_26857| Best HMM Match : Viral_NABP (HMM E-Value=2.6)
          Length = 526

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 480 CFNNVIT*LATKQVPPKTTDVLI 412
           C+NNV+T L  K VP KT  + I
Sbjct: 164 CYNNVLTKLLHKHVPIKTCTITI 186


>SB_58520| Best HMM Match : RVT_1 (HMM E-Value=0.035)
          Length = 556

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 480 CFNNVIT*LATKQVPPKTTDVLI 412
           C+NNV+T L  K VP KT  + I
Sbjct: 133 CYNNVLTKLLHKHVPIKTCTITI 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,460,386
Number of Sequences: 59808
Number of extensions: 389785
Number of successful extensions: 740
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)